PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.001G006600.2.p

Common Name

Sb01g000696, SORBIDRAFT_01g000696

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

WRKY

Protein Properties

Length: 392aa MW: 42414.6 Da PI: 6.5582

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.001G006600.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98	6.1e-31	196	254	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY+ eHnh+ Sobic.001G006600.2.p 196 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCMARKQVERSRSDPNMLVITYTAEHNHP 254 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	33.247	190	256	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	1.1E-30	193	256	IPR003657	WRKY domain
SuperFamily	SSF118290	1.83E-26	194	256	IPR003657	WRKY domain
SMART	SM00774	4.3E-38	195	255	IPR003657	WRKY domain
Pfam	PF03106	8.8E-26	197	254	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence Send to blast
MDIAEEAVAG TAAQGDLAEV VARAGAMAMA AAPSHHRRPP SPSPAAADHS HVMSRAAGQI 60 MAIPPACYDE EQELRPAAAC GDAVMFDVPS SMVVDPYHQL SSSAATAPPH GHGGYWLPPQ 120 QISQQACYGL DVAMGGAAAA DADGDEPMMM RISPVTPPPP SHHQIMKRKN EVKKVVCIPA 180 LPPASSRPGG GEVIPSDLWA WRKYGQKPIK GSPYPRGYYR CSSSKGCMAR KQVERSRSDP 240 NMLVITYTAE HNHPWPMQRN VLAGYSRPHT HMSNCKKKNS CRVEPTSSWP TSSSSSSSSK 300 NANYFEHNVV PSSNIECQQM TNMMEDNAAG YVAYAIDTLD EEGVAMHQPI NRNSIQPSDE 360 VFAELEELEP SNNPVNANIY SRGVSYEWQK F*

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence Send to blast

MDIAEEAVAG TAAQGDLAEV VARAGAMAMA AAPSHHRRPP SPSPAAADHS HVMSRAAGQI  60
MAIPPACYDE EQELRPAAAC GDAVMFDVPS SMVVDPYHQL SSSAATAPPH GHGGYWLPPQ  120
QISQQACYGL DVAMGGAAAA DADGDEPMMM RISPVTPPPP SHHQIMKRKN EVKKVVCIPA  180
LPPASSRPGG GEVIPSDLWA WRKYGQKPIK GSPYPRGYYR CSSSKGCMAR KQVERSRSDP  240
NMLVITYTAE HNHPWPMQRN VLAGYSRPHT HMSNCKKKNS CRVEPTSSWP TSSSSSSSSK  300
NANYFEHNVV PSSNIECQQM TNMMEDNAAG YVAYAIDTLD EEGVAMHQPI NRNSIQPSDE  360
VFAELEELEP SNNPVNANIY SRGVSYEWQK F*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	1e-23	169	256	2	79	Disease resistance protein RRS1
5w3x_D	1e-23	169	256	2	79	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.001G006600.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU964815	1e-155	EU964815.1 Zea mays clone 281745 WRKY transcription factor 14 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021317942.1	0.0	probable WRKY transcription factor 35 isoform X2
Swissprot	Q9SA80	3e-53	WRK14_ARATH; Probable WRKY transcription factor 14
TrEMBL	A0A1B6QGN9	0.0	A0A1B6QGN9_SORBI; Uncharacterized protein
STRING	Sb01g000696.1	0.0	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34830.1	2e-53	WRKY DNA-binding protein 35

Link Out ? help Back to Top
Phytozome	Sobic.001G006600.2.p
Entrez Gene	8060845

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]