PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G018350.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 364aa    MW: 39627.9 Da    PI: 5.0493
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G018350.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM26.61.6e-0891419127
                   NAM   9 PtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..........kvkaeekewyfFskrdkkya....tgkrknratksgy. 82 
                           Ptd+      L++  +g + ++ +++++vd++ + P+ L +            ++ ++ wyf++ ++ k++    +g+r++ +t  g  
  Sobic.001G018350.1.p   9 PTDNKASIALLRRLRAGGD-DV-QFVHRVDVCAAPPEVLVAdlepvpgtglDDDGYSRIWYFYHAKKYKNTrgdtSGHRQRAVTGGGGt 95 
                           7777776666655555544.66.68**************754677776644222245599******99999444334466557764423 PP

                   NAM  83 .WkatgkdkevlskkgelvglkktLvfy...kgrapkgektdWvmheyr 127
                            W++    k+v+ ++    g+  tL +    + +a++  +  W+m ey 
  Sobic.001G018350.1.p  96 aWHSEIGRKDVHGSG---GGTFCTLSYGcktEPSARSIDRMGWCMVEYD 141
                           5**99999**99844...467778888843344666667999******7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100514.2671168IPR003441NAC domain
SuperFamilySSF1019419.29E-139168IPR003441NAC domain
PfamPF023653.0E-49141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MASTKDPSPT DNKASIALLR RLRAGGDDVQ FVHRVDVCAA PPEVLVADLE PVPGTGLDDD  60
GYSRIWYFYH AKKYKNTRGD TSGHRQRAVT GGGGTAWHSE IGRKDVHGSG GGTFCTLSYG  120
CKTEPSARSI DRMGWCMVEY DFVAADKKQD EAAAADSTNY VLCKVYRSPR AKGKSAPPVS  180
ASSSSKNASS KQTAKKRKAG GGDHPEAPPA KSIQQQEQAQ QDTTACYQPQ GVESEHGGDF  240
IFNIDDINFY VDESMLRDEP EQGLQQPIVE PPPHEEFTVE WLLRGEPQQP IVEPPAAGHG  300
SEFIQMPSGL LVPVVAEATV DDMLGLGPET MYGQWSDGMT TTAKQDDEER KGRFHWHMDP  360
TWG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G018350.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002463549.10.0uncharacterized protein LOC8079646
TrEMBLA0A1Z5S4070.0A0A1Z5S407_SORBI; Uncharacterized protein
STRINGSb01g001790.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4574632