PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G018700.1.p
Common NameSb01g001830, SORBIDRAFT_01g001830
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 380aa    MW: 41133.7 Da    PI: 4.7111
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G018700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM26.12.4e-0891419127
                   NAM   9 PtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..........kvkaeekewyfFskrdkkya....tgkrknratk..sg 81 
                           Ptd+      L++  +g + ++ ++++++d++ + P+ L +            ++ ++ wyf++ ++ k++    +g+r++ +t     
  Sobic.001G018700.1.p   9 PTDNKASIALLRRLRAGGD-DV-QFVHRIDVCAAPPEVLVAdlepvpgtglDDDGYSRIWYFYHAKKYKNTrgdtSGHRQRAVTGgdGT 95 
                           7777776665655555544.66.68**************754677776644222245599******99999444233455555545344 PP

                   NAM  82 yWkatgkdkevlskkgelvglkktLvfykgrapkge...ktdWvmheyr 127
                            W++    k+v     +  g+  tL + ++++p+++   +  W+m ey 
  Sobic.001G018700.1.p  96 AWHSEIGRKDVQG---SGGGTFCTLSYGRKTEPSARsidRMGWCMVEYD 141
                           5**9999999987...34588889999977666655344899******7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100514.7351168IPR003441NAC domain
SuperFamilySSF1019411.83E-129168IPR003441NAC domain
PfamPF023652.9E-49141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MASNKDPSPT DNKASIALLR RLRAGGDDVQ FVHRIDVCAA PPEVLVADLE PVPGTGLDDD  60
GYSRIWYFYH AKKYKNTRGD TSGHRQRAVT GGDGTAWHSE IGRKDVQGSG GGTFCTLSYG  120
RKTEPSARSI DRMGWCMVEY DFVAADKKQD EAAAADSSNY VLCKVYRSPR AKGKSSALAS  180
SSSKNASSKH TAKKRKAGGA GEHPEAPPAK SIQQQQQEEY QPQADVQQPA EPGGDFNFNI  240
EDINFYLDDE CVMRADESEQ GGQGLQQQPI SEPKQHDVEF IRLPCGPVLP VVAEATVEDM  300
LGPETTTIDV QLSQQRHEQG GEFIQMPFGQ VLPVVAEATL EDMLGLGAGP GPETMNYGEW  360
SGGMATTARI EFVMQSDVM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G018700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002463549.11e-166uncharacterized protein LOC8079646
TrEMBLA0A1Z5S3Z70.0A0A1Z5S3Z7_SORBI; Uncharacterized protein
STRINGSb01g001830.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4574632