PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G023900.2.p
Common NameSb01g002270, SORBIDRAFT_01g002270
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family GATA
Protein Properties Length: 157aa    MW: 17015.4 Da    PI: 10.629
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G023900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.73.2e-182761135
                  GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                          C+ C+ttkTplWR gp g+ +LCnaCG++yrkk++
  Sobic.001G023900.2.p 27 CTECHTTKTPLWRGGPCGPMSLCNACGIRYRKKRR 61
                          ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.5582157IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.14E-132160No hitNo description
SMARTSM004013.9E-152174IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.5E-142261IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.04E-132661No hitNo description
PfamPF003205.5E-162761IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402752IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MDSSAEKGSG TLDPDERPPA SGETKACTEC HTTKTPLWRG GPCGPMSLCN ACGIRYRKKR  60
REAMGLDSSS KAGGGTEQQQ QRKKKATAAA AAAAASKRER ERSKEADEVT VELRAVGFGK  120
EVVLKQRRRM RRRRRLGEEE RAAFLLMALS SGVVYA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125131QRRRMRR
2127132RRMRRR
3127134RRMRRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G023900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7280131e-147KJ728013.1 Zea mays clone pUT6148 C2C2-GATA transcription factor (GATA18) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021306678.11e-109GATA transcription factor 16 isoform X2
TrEMBLA0A1B6QH041e-107A0A1B6QH04_SORBI; Uncharacterized protein
STRINGSb01g002270.15e-84(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26930.13e-18GATA transcription factor 23