PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G026500.1.p
Common NameSb01g002530, SORBIDRAFT_01g002530
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family SBP
Protein Properties Length: 970aa    MW: 105843 Da    PI: 5.1301
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G026500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.43.2e-41151228178
                           --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                   SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                           +CqvegC adl+ ak+yhrrhkvCe+h+ka++++v ++ qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  Sobic.001G026500.1.p 151 ACQVEGCGADLTAAKDYHRRHKVCEMHAKASTAVVGNTVQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNRRRRKTRP 228
                           5**************************************************************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.1E-34144213IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.624149226IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.54E-39150230IPR004333Transcription factor, SBP-box
PfamPF031104.6E-30152225IPR004333Transcription factor, SBP-box
CDDcd002041.49E-9726856No hitNo description
SMARTSM002480.24751780IPR002110Ankyrin repeat
PROSITE profilePS502979.145751818IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.64E-8752857IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.2E-8753856IPR020683Ankyrin repeat-containing domain
SMARTSM00248460797827IPR002110Ankyrin repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 970 aa     Download sequence    Send to blast
MEAARFGTQS SHLYGGGLGE LDLNRRENRV FGWDLNDWSW DSQRFVATPV PAQAANGSGL  60
NSSPSSSEEA EEDVARNGGL RGDTDKRKRV VVIDDDETED QDTVVNGGGS LSLRIGGTAV  120
GVEAMENSDV NEDERNGKKI RVQGGGSSGP ACQVEGCGAD LTAAKDYHRR HKVCEMHAKA  180
STAVVGNTVQ RFCQQCSRFH LLQEFDEGKR SCRRRLAGHN RRRRKTRPDT AVGGTASIED  240
KVSNYLLLSL IGICANLNSD NVQHSNSQEL LSTLLKNLGS VAKSLEPKEL CKLLEAYQSL  300
QNGSNAGTSG TANVAEEAAG PSNSKLPFVN GSHCGQASSS VVPVQSKATM VVTPEPASCK  360
LKDFDLNDTC NDMEGFEDGQ EGSPTPAFKT ADSPNCASWM QQDSTQSPPQ TSGNSDSTST  420
QSLSSSNGDT QCRTDKIVFK LFDKVPGDLP PVLRSQILGW LSSSPTDIES HIRPGCIILT  480
VYLRLVESAW QELSENMSLH LDKLLSSSTD DFWASGLVFV MVRRHLAFML NGQIMLDRPL  540
APSSHDYCKI LCVKPVAAPY SATINFRVEG FNLLSTSSRL ICSFEGRCIF QEDTDFIAEN  600
AECEDRDIEC LSFCCSVPGP RGRGFIEVED SGFSNGFFPF IIAEKDVCSE VSELESIFES  660
SSNEHANVND DARDQALEFI NELGWLLHRA NRMSKEDETD TSLAALNMWR FRNLGVFAME  720
REWCAVIKML LDFLFIGLVD VGSRSPEDVV LSENLLHAAV RRKSVNMVRF LLRYKPNKNS  780
KGTAQTYLFR PDALGPSTIT PLHIAAATSD AEDVLDVLTD DPGLIGISAW SNARDETGFT  840
PEDYARQRGN DAYLNLVQKK IDKHLGKGHV VLGVPSSICS VITDGVKPGD VSLEICRPMS  900
AAVPSCLLCS RQARVYPNST TKTFLYRPAM LTVMGVAVVC VCVGILLHTF PRVYAAPTFR  960
WESLERGAM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-31146225184squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.37410.0leaf| panicle| shoot
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16861571}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00633PBMTransfer from PK06791.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G026500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0388520.0BT038852.1 Zea mays full-length cDNA clone ZM_BFb0336G12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466159.10.0squamosa promoter-binding-like protein 6
SwissprotQ75LH60.0SPL6_ORYSJ; Squamosa promoter-binding-like protein 6
TrEMBLC5WU180.0C5WU18_SORBI; Uncharacterized protein
STRINGSb01g002530.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19983892
Representative plantOGRP25951432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60030.10.0squamosa promoter-binding protein-like 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]