PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.001G030800.1.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

NAC

Protein Properties

Length: 454aa MW: 49813.7 Da PI: 4.2439

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.001G030800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	24.1	1e-07	10	146	7	126
NAM 7 FhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..........kvka.eekewyfFskrdkkyatgk...rknra...t 78 F+Ptde + L + +++k++ ++i+++d++++ P++L + + + ++ wy +++++ k+++g+ +++ra Sobic.001G030800.1.p 10 FRPTDEASI--ALLRGLRTKTIVDRSFIHRADVCSAAPEELVAdlqpvpgtdaT-EDgYNSVWYIYCPKRYKNTRGNasgHRQRAlevD 95 99**999..5778889999888799**********7556788876532.22244599***9999665333333332224 PP NAM 79 ksgyWkatgkdkevlskkgelvglkktLvfy.......kgrapkgektdWvmhey 126 ++ +W++ k+v g+ + L + +gr++ + W+m e+ Sobic.001G030800.1.p 96 AKMRWHSETGPKPVQGVPGA---TFCNLSYGrkekdgaSGRQRL-DRMGWCMTEF 146 488899999999874332...223344432221111233322.4777888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	12.053	4	164	IPR003441	NAC domain
SuperFamily	SSF101941	2.22E-10	10	163	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence Send to blast
MATNDDDDVF RPTDEASIAL LRGLRTKTIV DRSFIHRADV CSAAPEELVA DLQPVPGTDA 60 TEDGYNSVWY IYCPKRYKNT RGNASGHRQR ALEVDAKMRW HSETGPKPVQ GVPGATFCNL 120 SYGRKEKDGA SGRQRLDRMG WCMTEFDDTQ GGGGDHVLCR LHRSSSSLAK KKYSKSSSSS 180 SKRKAAGDHP EAPPIKLIHD DVEQVQQEPA ASFFPDAYPT MPCYGYGPPQ GVDPVTMIGG 240 EEEYGVQQPH VEPEYGGEFN FDELLNIDEQ EQQVQMQDPA AFFTNADPTM PCYGYGPPEG 300 VNPVTMVGGE EERGVQQPQV ELEAEHVDGG EFNVEELLNM EEFTNAYPTT TTMPSYVHGG 360 PQGVDYPAMF GGEEEHGVGV QQPHVESEAE HGGDLGGFNL EELLNKDDWN SFLKMLQAEG 420 EQGQQQQQPC AEPEPEPEQG GGIVISRDLL YAC*

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence Send to blast

MATNDDDDVF RPTDEASIAL LRGLRTKTIV DRSFIHRADV CSAAPEELVA DLQPVPGTDA  60
TEDGYNSVWY IYCPKRYKNT RGNASGHRQR ALEVDAKMRW HSETGPKPVQ GVPGATFCNL  120
SYGRKEKDGA SGRQRLDRMG WCMTEFDDTQ GGGGDHVLCR LHRSSSSLAK KKYSKSSSSS  180
SKRKAAGDHP EAPPIKLIHD DVEQVQQEPA ASFFPDAYPT MPCYGYGPPQ GVDPVTMIGG  240
EEEYGVQQPH VEPEYGGEFN FDELLNIDEQ EQQVQMQDPA AFFTNADPTM PCYGYGPPEG  300
VNPVTMVGGE EERGVQQPQV ELEAEHVDGG EFNVEELLNM EEFTNAYPTT TTMPSYVHGG  360
PQGVDYPAMF GGEEEHGVGV QQPHVESEAE HGGDLGGFNL EELLNKDDWN SFLKMLQAEG  420
EQGQQQQQPC AEPEPEPEQG GGIVISRDLL YAC*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.001G030800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A1Z5S456	0.0	A0A1Z5S456_SORBI; Uncharacterized protein
STRING	Sb01g002900.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4574	6	32

Link Out ? help Back to Top
Phytozome	Sobic.001G030800.1.p