PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.001G031000.1.p

Common Name

Sb01g002900, SORBIDRAFT_01g002900

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

NAC

Protein Properties

Length: 435aa MW: 47584.5 Da PI: 4.5543

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.001G031000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	27.6	8.4e-09	9	146	7	126
NAM 7 FhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..........kvkaeekewyfFskrdkkyatgk...rknratk... 79 F+Ptd+ + L + +++k++ ++i++vdi+++ P++L + + ++ ++ wy ++ ++ k+++gk r++ra++ Sobic.001G031000.1.p 9 FRPTDKASI--ALLRGLRSKTIVDRTFIHRVDICSAAPEELVAdlqpvpgtdvTEDGYNSVWYIYCLKRYKNTRGKpsgRRQRAVEpdg 95 99*9999..5778889999888789**********755678887753222244599*****998875556666555655 PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfy.....kgrapkgektdWvmhey 126 + W++ k+v g ++ + + +gr++ + W+m e+ Sobic.001G031000.1.p 96 KTSWHSETGPKPVQGVPGGATFCNFSYGRKekdgaSGRQR-LDRMGWCMTEF 146 77799999999886444444433322222211112222.24778888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	11.35	3	164	IPR003441	NAC domain
SuperFamily	SSF101941	8.63E-12	9	163	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence Send to blast
MATNADDVFR PTDKASIALL RGLRSKTIVD RTFIHRVDIC SAAPEELVAD LQPVPGTDVT 60 EDGYNSVWYI YCLKRYKNTR GKPSGRRQRA VEPDGKTSWH SETGPKPVQG VPGGATFCNF 120 SYGRKEKDGA SGRQRLDRMG WCMTEFDDTQ GGGGDHVLCR LHRSSSSLAK KKSKSSSSSS 180 SKRKAAADHP EAPPTKLIHN EQVQMQDPAA FFPNAYPTMP CYGYGPPQGV DPVTTIGGEE 240 EYGVQQPRVE PEYGGEFNFD ELLNIDEQEQ VQMQDAASFP DAYPTMPCHG YGPPQGVDPV 300 MMIGGEEEYG VQQPRVEPDY GGEFNSDELL NIDEQVQMQD PAAFFTNGYP TIPACYGHGG 360 PQGVDPVTFG DVEPEHGGDL GVFNFQDLLK TDEWKDFEEF LAAGEQGLHC SSHAPSSLSQ 420 SQDMFLSANH VHVA*

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence Send to blast

MATNADDVFR PTDKASIALL RGLRSKTIVD RTFIHRVDIC SAAPEELVAD LQPVPGTDVT  60
EDGYNSVWYI YCLKRYKNTR GKPSGRRQRA VEPDGKTSWH SETGPKPVQG VPGGATFCNF  120
SYGRKEKDGA SGRQRLDRMG WCMTEFDDTQ GGGGDHVLCR LHRSSSSLAK KKSKSSSSSS  180
SKRKAAADHP EAPPTKLIHN EQVQMQDPAA FFPNAYPTMP CYGYGPPQGV DPVTTIGGEE  240
EYGVQQPRVE PEYGGEFNFD ELLNIDEQEQ VQMQDAASFP DAYPTMPCHG YGPPQGVDPV  300
MMIGGEEEYG VQQPRVEPDY GGEFNSDELL NIDEQVQMQD PAAFFTNGYP TIPACYGHGG  360
PQGVDPVTFG DVEPEHGGDL GVFNFQDLLK TDEWKDFEEF LAAGEQGLHC SSHAPSSLSQ  420
SQDMFLSANH VHVA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.001G031000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	C5WUY1	0.0	C5WUY1_SORBI; Uncharacterized protein
STRING	Sb01g002900.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4574	6	32

Link Out ? help Back to Top
Phytozome	Sobic.001G031000.1.p
Entrez Gene	8079709