PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G035000.1.p
Common NameSb01g003270, SORBIDRAFT_01g003270
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 150aa    MW: 15137.2 Da    PI: 10.4827
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G035000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00054108128323
                           ETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                           C+ Cg sF     L  H+r+H
  Sobic.001G035000.1.p 108 CHVCGLSFEMGQALGGHMRRH 128
                           ********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003551.55072IPR015880Zinc finger, C2H2-like
PfamPF139124.8E-105074IPR007087Zinc finger, C2H2
PROSITE profilePS501579.7025077IPR007087Zinc finger, C2H2
SuperFamilySSF576672.24E-65072No hitNo description
PROSITE patternPS0002805272IPR007087Zinc finger, C2H2
SuperFamilySSF576672.24E-6101128No hitNo description
SMARTSM003551.4106128IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.702106133IPR007087Zinc finger, C2H2
PfamPF139128.2E-11106131IPR007087Zinc finger, C2H2
PROSITE patternPS000280108128IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MAKHPRDSGA GAVPLSLALS LGGGGVAAEH GSNKRHRRAA AGGGDGGGEF VCKTCSRAFG  60
SFQALGGHRT SHLRGRHGLA LGMPAPAKDD AKETTTKQPA AASASHLCHV CGLSFEMGQA  120
LGGHMRRHRE EAAAATTAQA PPVLLQLFV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G035000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0869794e-59BT086979.2 Zea mays full-length cDNA clone ZM_BFb0223D14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466195.11e-101zinc finger protein ZAT12
TrEMBLC5WV171e-100C5WV17_SORBI; Uncharacterized protein
STRINGSb01g003270.11e-101(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Representative plantOGRP1190434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.19e-19C2H2 family protein