PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G035100.1.p
Common NameSb01g003280, SORBIDRAFT_01g003280
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 184aa    MW: 19349.5 Da    PI: 8.699
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G035100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.00155880123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          ++C+ C++ F++   L  H  +H
  Sobic.001G035100.1.p 58 FVCKTCSRAFTSFQALGGHRTSH 80
                          89**********99998888777 PP
2zf-C2H212.40.00049125147123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C++Cg  F     L  H+r+H
  Sobic.001G035100.1.p 125 HECHICGLGFEMGQALGGHMRRH 147
                           79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.615880IPR015880Zinc finger, C2H2-like
PfamPF139128.1E-105882IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.0765885IPR007087Zinc finger, C2H2
SuperFamilySSF576677.87E-75880No hitNo description
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
SuperFamilySSF576677.87E-7120147No hitNo description
SMARTSM003550.49125147IPR015880Zinc finger, C2H2-like
PfamPF139121.7E-10125150IPR007087Zinc finger, C2H2
PROSITE profilePS501579.619125152IPR007087Zinc finger, C2H2
PROSITE patternPS000280127147IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MKHPRTEQEA AGEVVSLALS LSTDSSTTSD STGTPSSAGA KRARRRGAVV ATSGEGEFVC  60
KTCSRAFTSF QALGGHRTSH LRGRHGLELG VGARALKQHK QQAAAAEASG RGGDNKPPQQ  120
QQQQHECHIC GLGFEMGQAL GGHMRRHREE MGAAEAADAW VWRTEAPRTA AAADPPVLLE  180
LFA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.196730.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G035100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9687273e-82EU968727.1 Zea mays clone 323750 ZFP16-2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466196.11e-130zinc finger protein ZAT5
TrEMBLC5WV181e-129C5WV18_SORBI; Uncharacterized protein
STRINGSb01g003280.11e-129(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Representative plantOGRP1390044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46070.17e-18C2H2 family protein