PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G040900.1.p
Common NameSb01g003775, SORBIDRAFT_01g003775
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 470aa    MW: 50566.6 Da    PI: 7.6524
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G040900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM90.92.1e-282513853128
                   NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknra.......tksgyW 83 
                           +G+rFhPtd++l+  yLk k +g+++++ +++k++d+y+++P  ++ ++ ++++  wy Fs+rd+ky++gkr+ r+        + g+W
  Sobic.001G040900.1.p 251 VGVRFHPTDQQLI-GYLKIKYAGQQMPV-KFFKDFDVYQAHPMAIKgACGESQDGCWYAFSPRDRKYRNGKRPARSvfaegggHQVGFW 337
                           7************.9*************.89**************955666677799******************76888887779*** PP

                   NAM  84 katgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           k+  +  +v +    +g+++g  ++L+f  gr+p+g++t W m+ey++
  Sobic.001G040900.1.p 338 KSNSRLGDVRAGgtkDGAVIGRMTSLTFQLGRQPRGKQTGWKMKEYTI 385
                           *****99999875557777***************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100535.441249410IPR003441NAC domain
SuperFamilySSF1019411.44E-35250410IPR003441NAC domain
PfamPF023653.5E-15251385IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MDTSFPPLPA PPALYTQPEL SYSYYLQEPF QSCFAAPLAV EPTTIRPQLQ VPATETASMP  60
LSSLHYSQTQ QATTTGSESV EEASPALADT QQKARDETRP APRRRGRPSK RERALAVSEP  120
PVSKPTKRVA VGRNRAASST SQTMTSSATT AGTATTMSSS AAGQVPEQAG GSSSSTGSTS  180
DQQTAACTST NRPMALLCEE RRCGQLQRPA VSNSAPAAAG VVVEGHHQQA AIAPPELTMV  240
TGPPYADTSA VGVRFHPTDQ QLIGYLKIKY AGQQMPVKFF KDFDVYQAHP MAIKGACGES  300
QDGCWYAFSP RDRKYRNGKR PARSVFAEGG GHQVGFWKSN SRLGDVRAGG TKDGAVIGRM  360
TSLTFQLGRQ PRGKQTGWKM KEYTIPENQH QPDGSAMLLN DWVVCKLFYK EGAGCTNTES  420
MQGEEDMQPQ MVPAAHLASD YSERDLCVED YLVCDVGFAQ EKDAANCTI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-2223741312168NO APICAL MERISTEM PROTEIN
1ut4_B1e-2223741312168NO APICAL MERISTEM PROTEIN
1ut7_A1e-2223741312168NO APICAL MERISTEM PROTEIN
1ut7_B1e-2223741312168NO APICAL MERISTEM PROTEIN
3swm_A2e-2223741315171NAC domain-containing protein 19
3swm_B2e-2223741315171NAC domain-containing protein 19
3swm_C2e-2223741315171NAC domain-containing protein 19
3swm_D2e-2223741315171NAC domain-containing protein 19
3swp_A2e-2223741315171NAC domain-containing protein 19
3swp_B2e-2223741315171NAC domain-containing protein 19
3swp_C2e-2223741315171NAC domain-containing protein 19
3swp_D2e-2223741315171NAC domain-containing protein 19
4dul_A1e-2223741312168NAC domain-containing protein 19
4dul_B1e-2223741312168NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G040900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1Z5S4B60.0A0A1Z5S4B6_SORBI; Uncharacterized protein
STRINGSb01g003775.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131302130
Representative plantOGRP1390234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18060.16e-26vascular related NAC-domain protein 1