PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G041500.2.p
Common NameSb01g003830, SORBIDRAFT_01g003830
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 192aa    MW: 20168 Da    PI: 7.4463
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G041500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.12.1e-055401454
                          HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH 14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                          +ri+s +++Lr +l  +     +K +Ka+ L kAve +++L
  Sobic.001G041500.2.p  5 ERIKSHLDRLRNVLACD-----PKIDKASLLAKAVERVRDL 40
                          59*************98.....7*************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.15E-5542No hitNo description
SuperFamilySSF474593.53E-5545IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-4643IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MFPAERIKSH LDRLRNVLAC DPKIDKASLL AKAVERVRDL KQRAAGVGEA APAHLFPTEH  60
DEIVVLASGS GAVFEASVCC DDRSDLLPDL IETLRALRLR TLRAEMATLG GRVRNVLVLA  120
RDVADGGVVV TGDDDGYGGR AADSVGATDG ANGTGGDFLK EALRALVERP GAAGDRPKRR  180
RVSGMNMQAA A*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177181KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G041500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279660.0KJ727966.1 Zea mays clone pUT6079 bHLH transcription factor (bHLH48) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466222.11e-128transcription factor bHLH106
TrEMBLA0A1Z5S4941e-130A0A1Z5S494_SORBI; Uncharacterized protein
STRINGSb01g003830.11e-127(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.11e-33bHLH family protein