PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G044300.9.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 262aa    MW: 28074.1 Da    PI: 8.4863
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G044300.9.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_176.43.6e-24153215163
                           XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                           e+elkrerrkq+NRe+ArrsR+RK++e+eeL++kv  L+a N +L++el+elkk ++ +++e+
  Sobic.001G044300.9.p 153 ERELKRERRKQSNRESARRSRLRKQQECEELAQKVTDLTAINGTLRSELDELKKACEDMEAEN 215
                           89*********************************************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.3E-16148213No hitNo description
SMARTSM003381.0E-20153217IPR004827Basic-leucine zipper domain
PfamPF001701.1E-21153215IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.576155218IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.06E-10156210No hitNo description
CDDcd147024.42E-18158208No hitNo description
PROSITE patternPS000360160175IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MQSVPYPSAE PVAVAEGKGK RKSPGAPSVG CTSGSAGGSE NSSDKRDASA HHKVLPSVKR  60
RKSSGANVQG EPSQAATGQD AAAESRITAK KRSAAKLSIS TPEMAATSNV RPNLNIGMEL  120
WSDSPVKAET SGQGEIYAAA PSQLDSALSM MDERELKRER RKQSNRESAR RSRLRKQQEC  180
EELAQKVTDL TAINGTLRSE LDELKKACED MEAENSQLMG ELEQFEAPSV VTTLSIQIDT  240
SKAHHRSSDQ HGNRNNTDSK V*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169175RRSRLRK
2169176RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtInteracts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G044300.9.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6852070.0AY685207.1 Zea mays ABRE-binding factor Embp-2 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021317831.10.0DNA-binding protein EMBP-1 isoform X1
SwissprotP250329e-61EMBP1_WHEAT; DNA-binding protein EMBP-1
TrEMBLA0A1Z5S4B90.0A0A1Z5S4B9_SORBI; Uncharacterized protein
STRINGSb01g004080.11e-157(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32150.18e-29basic region/leucine zipper transcription factor 68