PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G051300.1.p
Common NameSb01g004710, SORBIDRAFT_01g004710
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 254aa    MW: 27216.2 Da    PI: 7.5559
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G051300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.61.7e-11134181455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h+ +Er RR++i +++  L++l+P +    +k   Ka++L + ++YI+sLq
  Sobic.001G051300.1.p 134 SHSLAERARREKISERMKVLQDLVPGC----NKVIGKASVLDEIINYIQSLQ 181
                           8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.57E-11128185No hitNo description
SuperFamilySSF474596.41E-18128197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.406130180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-18130200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.2E-9134181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-11136186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MEPSPAVAAE LWCPPHLAAG GGRQVEATSA LTEKSSGGRG GGSAVRRRPR ETLASEEDSS  60
RIVSTSGGGQ DLTDPEAKRS KTNKSSNNNG SLRTEAETDP RSAGKAVSKS LPAAEPPKQD  120
YIHVRARRGQ ATDSHSLAER ARREKISERM KVLQDLVPGC NKVIGKASVL DEIINYIQSL  180
QCQVEFLSMK LEAVNAHANQ GVEAFPVKDY GAETYNTAPG LTFDTQTSRE YAQGTSTSEW  240
LHMQIGSGYE RVS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may regulate jasmonate-regulated genes. {ECO:0000250|UniProtKB:Q69WS3}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G051300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9668680.0EU966868.1 Zea mays clone 297857 protein SPATULA mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002463714.10.0transcription factor bHLH79
SwissprotQ84T081e-112BH089_ORYSJ; Transcription factor BHLH089
TrEMBLC5WX130.0C5WX13_SORBI; Uncharacterized protein
STRINGSb01g004710.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30653577
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.12e-69BIG PETAL P
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]