PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G056700.1.p
Common NameSb01g005170, SORBIDRAFT_01g005170
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 406aa    MW: 42337.1 Da    PI: 5.1572
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G056700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.92.1e-13216267556
                           CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                           + +rrkq+NRe+ArrsR RK a + eLe  v++L  eN++L  +l   +++ 
  Sobic.001G056700.1.p 216 RLQRRKQSNRESARRSRSRKAAHLNELEAQVAQLRVENSSLLRRLADVNQKF 267
                           679**************************************98887777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.3E-15212276IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.254214269IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1709.5E-10215268No hitNo description
PfamPF001703.9E-10216265IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.75E-9216265No hitNo description
PfamPF124988.4E-50283398IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MERVFSVEEI PNPYWAPPHP QSAAAGAVAA PGGGGGAVDA AGAMNRCPSE WYFQKFLEEA  60
VLDSPGPVPG VGRGSVVAGA EAPESKPLGP AAASSSVVDP VEYNAMLKQK LEKDLAAVAM  120
WRASGAAPPD RSAVASSLPS VDVPHAAPLK PIGGTESLVQ NKLAGAPGVG SGPHVVQTAD  180
IPIKQTTSSS SREQSDDDDM EGDAETTGNA NPVQQRLQRR KQSNRESARR SRSRKAAHLN  240
ELEAQVAQLR VENSSLLRRL ADVNQKFNEA AVDNRVLKAD VETLRAKVKM AEDSVKRVTG  300
MNALFPAVSD MSSLSMPFNG SPTDSTSDAA VPIQDDPNSY FANPSEIGGN NGYMPDIASS  360
VQEDDNFVNG AAGKMGRTAS LQRVASLEHL QKRMCGGPAS SGSTS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.108220.0panicle| root| shoot
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in developing seeds from 5 to 30 days after flowering (DAF). {ECO:0000269|PubMed:11133985}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the DNA specific sequence 5'-GCCACGT[AC]AG-3' found in the alpha-globulin gene promoter (PubMed:9049271, PubMed:11572990). Does not bind to promoters of other major storage genes such as glutelin, prolamin and albumin (PubMed:9049271). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:11572990, ECO:0000269|PubMed:9049271}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00040PBMTransfer from AT5G28770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G056700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9614490.0EU961449.1 Zea mays clone 235570 regulatory protein opaque-2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002463740.10.0light-inducible protein CPRF2
SwissprotQ7X9A81e-178RSBZ2_ORYSJ; bZIP transcription factor RISBZ2
TrEMBLC5WX700.0C5WX70_SORBI; Uncharacterized protein
STRINGSb01g005170.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34883878
Representative plantOGRP18391639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.22e-43bZIP family protein
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Yang D,Wu L,Hwang YS,Chen L,Huang N
    Expression of the REB transcriptional activator in rice grains improves the yield of recombinant proteins whose genes are controlled by a Reb-responsive promoter.
    Proc. Natl. Acad. Sci. U.S.A., 2001. 98(20): p. 11438-43
    [PMID:11572990]
  3. Cheng S,Wang Z,Hong M
    Rice bZIP protein, REB, interacts with GCN4 motif in promoter of Waxy gene.
    Sci. China, C, Life Sci., 2002. 45(4): p. 352-60
    [PMID:18759022]