PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G069400.2.p
Common NameSb01g006270, SORBIDRAFT_01g006270
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family GeBP
Protein Properties Length: 261aa    MW: 28586.2 Da    PI: 9.6511
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G069400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57330.79e-1070162397
                DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 
                           +qr w ++Dei+lL ++ + ++k+g  ps d  a     +   + + + +q+ +++  L+ ++ +   + k+g  +  +k++d  i+ l
  Sobic.001G069400.2.p  70 PQRSWPDSDEIALLEAVASHRKKHGRLPSPDELAAALRGRIFSEERLTAEQVAKRLLALRTRYGNAAIRLKRG--IIPAKDSDLTIYRL 156
                           79************************999997777777777778899********************996666..556789999***** PP

                DUF573  92 skkiWg 97 
                           sk iW 
  Sobic.001G069400.2.p 157 SKLIWA 162
                           *****6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.6E-1571161IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MASEERPSPV PSDDTTTTTV SDEHLSPPSS PSTTFDSAPE SDVSAASSLL SDGSSGPDPE  60
PIVSRKPRPP QRSWPDSDEI ALLEAVASHR KKHGRLPSPD ELAAALRGRI FSEERLTAEQ  120
VAKRLLALRT RYGNAAIRLK RGIIPAKDSD LTIYRLSKLI WADTRKGKME KKTRAPDARE  180
DPRGFDELTE LYPCLSAEAE AIDARCGYGS LKRAFGRIGD DTAARLEAKL KRQRVAEARQ  240
SAKLDRLRTD VANALQKFIK *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228233KLKRQR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.212400.0pollen
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G069400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466354.10.0uncharacterized protein LOC8084155
TrEMBLC5WZ210.0C5WZ21_SORBI; Uncharacterized protein
STRINGSb01g006270.10.0(Sorghum bicolor)