PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G075900.1.p
Common NameSb01g006850, SORBIDRAFT_01g006850
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 200aa    MW: 21757.7 Da    PI: 9.3278
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G075900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_139.31.4e-1279132154
                           XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 
                           +++l+r+rrk++NR++A+rsR+RK++++eeL+e ++ L ae ++L  +l+ l  
  Sobic.001G075900.1.p  79 QERLRRQRRKMSNRLSAQRSRARKQQRLEELRESAARLRAEKQELEARLQALAR 132
                           5789*********************************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR000439.9E-56888IPR002112Transcription factor Jun
Gene3DG3DSA:1.20.5.1705.4E-1073132No hitNo description
SMARTSM003381.0E-879143IPR004827Basic-leucine zipper domain
PfamPF001703.3E-879131IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.12881144IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.19E-783132No hitNo description
PROSITE patternPS00036086101IPR004827Basic-leucine zipper domain
CDDcd147025.97E-1088133No hitNo description
PRINTSPR000439.9E-590106IPR002112Transcription factor Jun
PRINTSPR000439.9E-5108120IPR002112Transcription factor Jun
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MLSVQDALDL ASSSSYGTMD IITCGFTPWG PESCPSLDQV MASSRPATAA STAVVQEAEA  60
ARDGADAHPD PDPDPEEEQE RLRRQRRKMS NRLSAQRSRA RKQQRLEELR ESAARLRAEK  120
QELEARLQAL ARHDLAVRCQ NARLRAEATA LARRVREASR LLALRRLAYA YALPQQQAAG  180
VGVVPAAAAP LMGLASLMT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G075900.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9576761e-114EU957676.1 Zea mays clone 1603335 ocs element-binding factor 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466386.11e-137DNA-binding protein EMBP-1
TrEMBLC5WZ821e-136C5WZ82_SORBI; Uncharacterized protein
STRINGSb01g006850.11e-137(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138452429
Representative plantOGRP1264445