PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.001G078700.1.p

Common Name

Dof10, Sb01g007110, SORBIDRAFT_01g007110

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

Dof

Protein Properties

Length: 381aa MW: 38671.8 Da PI: 9.1322

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.001G078700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.2	7.7e-38	79	136	3	60
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++ l+cprC+s+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rk + Sobic.001G078700.1.p 79 QTPLRCPRCNSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKPRP 136 66789**************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.3E-31	81	135	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	3.0E-27	82	133	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.096	82	136	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	84	120	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence Send to blast
MIQELLGGAA MDQLKSVNDV NAASLPLLLH PVISNPSPTS SSSTSSRSSA QQQQRSTSAT 60 SSPQGQGPQQ QGQGQGAEQT PLRCPRCNSS NTKFCYYNNY NLTQPRHFCK TCRRYWTKGG 120 ALRNVPIGGG CRKPRPMPTP VAKPVISSCK AVGGGVPSLG LGVGLGMGMG AGPGPWASSQ 180 QAAAAQLMAL LNSARGVHQG GGNMHRLLGL DAMAHLPLHV LPGAGNNNAG GTAPSLWPQS 240 APRAIPTPPH MDSQLGMGPL GQHDVLSSLG LKLPPPSSSP AAASYYSDQL HAVVSSAAGR 300 GGHEYEAAAS GAMSLPCTTA LTSLPPAASS VSAALTSCAT VGLDLPPVSV PASEMQYWAA 360 GPAAMSVAWP DLPTPNGAFP *

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence Send to blast

MIQELLGGAA MDQLKSVNDV NAASLPLLLH PVISNPSPTS SSSTSSRSSA QQQQRSTSAT  60
SSPQGQGPQQ QGQGQGAEQT PLRCPRCNSS NTKFCYYNNY NLTQPRHFCK TCRRYWTKGG  120
ALRNVPIGGG CRKPRPMPTP VAKPVISSCK AVGGGVPSLG LGVGLGMGMG AGPGPWASSQ  180
QAAAAQLMAL LNSARGVHQG GGNMHRLLGL DAMAHLPLHV LPGAGNNNAG GTAPSLWPQS  240
APRAIPTPPH MDSQLGMGPL GQHDVLSSLG LKLPPPSSSP AAASYYSDQL HAVVSSAAGR  300
GGHEYEAAAS GAMSLPCTTA LTSLPPAASS VSAALTSCAT VGLDLPPVSV PASEMQYWAA  360
GPAAMSVAWP DLPTPNGAFP *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.001G078700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC582407	0.0	KC582407.1 Sorghum bicolor dof10 protein (dof10) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002463834.2	0.0	uncharacterized protein LOC8086191
TrEMBL	A0A1B6QHT9	0.0	A0A1B6QHT9_SORBI; Uncharacterized protein
STRING	Sb01g007110.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7710	31	44
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07640.1	1e-31	Dof family protein

Link Out ? help Back to Top
Phytozome	Sobic.001G078700.1.p
Entrez Gene	8086191

Publications ? help Back to Top
Kushwaha H,Gupta S,Singh VK,Rastogi S,Yadav D Genome wide identification of Dof transcription factor gene family in sorghum and its comparative phylogenetic analysis with rice and Arabidopsis. Mol. Biol. Rep., 2011. 38(8): p. 5037-53 [PMID:21161392]