PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G078900.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family G2-like
Protein Properties Length: 343aa    MW: 36144.7 Da    PI: 6.5184
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G078900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.61e-31214269156
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                           k+r++W+peLH++Fv a++qLGG+++AtPk+i+e+m+v+gLt+++vkSHLQkYRl+
  Sobic.001G078900.1.p 214 KARRCWSPELHRQFVAALHQLGGPQVATPKQIREVMQVDGLTNDEVKSHLQKYRLH 269
                           68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.1E-29211272IPR009057Homeodomain-like
PROSITE profilePS5129414.278211271IPR017930Myb domain
SuperFamilySSF466891.16E-16212272IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-25214269IPR006447Myb domain, plants
PfamPF002491.1E-7216267IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MGLDVGEIGM GLDLGLDLRL FAARTAGGMA AAAAKGAPAG IESCIRSLEE ERKKIEVFRR  60
ELPLCARLLA DVIDELKEEA AKRGGGDADA KADDGDKRKW MSTAQLWVDS EAKSDESDKE  120
HQSEITSPEP KLLGGAPMPI RAVAAVPPLP PPFFRREDSS AGTCLSLVSP ASKAPISPVA  180
TSDNASGRFC PTMPPSGSSG VTLHSQAQQQ ASRKARRCWS PELHRQFVAA LHQLGGPQVA  240
TPKQIREVMQ VDGLTNDEVK SHLQKYRLHN RRSPGVAPVS QPIMLVGGLW APQEQSSSGS  300
PQGPLQFSGS GVAISTATVG GDSSGSSSDE DDKSEGYSRK CV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-14214267154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-14214267154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-14214267154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-14214267154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.8890.0callus| leaf| ovary| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G078900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7280550.0KJ728055.1 Zea mays clone pUT6201 G2-like transcription factor (GLK44) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021307622.10.0transcription factor HHO5-like
TrEMBLA0A1B6QHV10.0A0A1B6QHV1_SORBI; Uncharacterized protein
STRINGSb01g007130.11e-178(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP181737107
Representative plantOGRP25631133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.14e-35G2-like family protein