PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G079300.1.p
Common NameSb01g007160, SORBIDRAFT_01g007160
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 293aa    MW: 31695 Da    PI: 6.6239
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G079300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.86.1e-112192591055
                           HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           rrRR+riN+++  L++l+P+      +K++ +++Le+Av+Y++ Lq
  Sobic.001G079300.1.p 219 RRRRERINERLKILQKLVPNG-----TKVDISTMLEEAVHYVRFLQ 259
                           9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.193209258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-15211276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-14214272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-13215264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-8219259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.14E-4225263No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MSQAELAAWL ESQDAHWCSQ YQPAPAPALD EESEIVAQFL AAPYPYQLND DGGQEQQKRH  60
HELGLGVVSA TTSATYCPEP CNVTGPGAAD ASNSNSSARG TGAYFDSSGC TLVDDLIPAE  120
PSPPQPKRKV RASRDGEDLG RHKKKSRASD NKHETKAASE TSQKCSQESS QQSRGSCSGD  180
ESNYSDVNRR SGAHGGSGGN AKAQAAKGSA TDPQSLYARR RRERINERLK ILQKLVPNGT  240
KVDISTMLEE AVHYVRFLQQ QIKMLSSDEM WMYAPIAYNG MSLGIDMKIS PQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G079300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1847711e-85KF184771.1 Saccharum hybrid cultivar R570 clone BAC 029M13 complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466402.10.0transcription factor bHLH84
TrEMBLC5X0300.0C5X030_SORBI; Uncharacterized protein
STRINGSb01g007160.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144452123
Representative plantOGRP10481454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.17e-41bHLH family protein