PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G106000.2.p
Common NameSb01g009460, SORBIDRAFT_01g009460
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family TALE
Protein Properties Length: 372aa    MW: 40469.6 Da    PI: 6.7535
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G106000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.65e-092813152155
                           HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
              Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                           + +yps+ e+  LA+++gL+++q+ +WF N+R ++
  Sobic.001G106000.2.p 281 RWPYPSEMEKIALAESTGLEQKQINNWFINQRKRH 315
                           569*****************************885 PP
2ELK35.22.7e-12235256122
                   ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                           ELK+qLlrKYsg+Lg+L++E++
  Sobic.001G106000.2.p 235 ELKKQLLRKYSGCLGNLRKELC 256
                           9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.9E-1983127IPR005540KNOX1
PfamPF037901.2E-1885126IPR005540KNOX1
SMARTSM012565.9E-25135186IPR005541KNOX2
PfamPF037914.7E-19141185IPR005541KNOX2
SMARTSM011881500144164IPR005539ELK domain
PfamPF037899.5E-10235256IPR005539ELK domain
SMARTSM011886.0E-7235256IPR005539ELK domain
PROSITE profilePS5121310.72235255IPR005539ELK domain
PROSITE profilePS5007112.73255318IPR001356Homeobox domain
SuperFamilySSF466896.84E-20257332IPR009057Homeodomain-like
SMARTSM003896.7E-13257322IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.9E-27260320IPR009057Homeodomain-like
CDDcd000866.40E-13267319No hitNo description
PfamPF059204.7E-16275314IPR008422Homeobox KN domain
PROSITE patternPS000270293316IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MEDLSDLGGR GHLGAATSRR PAPPSLPSSS SSKVSVQVYT VPSSSAAGGG GEAAARAQGG  60
VAPLIHASSS VGGHGGRVAD LLDPIKAKIV SHPRYHRLLA AFLDCHKVGC PPEAAEEIAA  120
AAREREAWQR AAVGDAHNTR PDPELDQFME SYSELLVAWK EELTRPLREA KEFLTTVELQ  180
LNSITNTGPP MGALISSAAE DNTGLDMSDD DQEEGSGGME AEAALGIDPC SDDKELKKQL  240
LRKYSGCLGN LRKELCKKRK KGKLPKEARQ KLLSWWELHY RWPYPSEMEK IALAESTGLE  300
QKQINNWFIN QRKRHWKPSE EMQFAVMDGF HPGAPPNAAA FYVDARLVGA TPAMFYARPE  360
HGAHHGLWHN N*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1250259LRKELCKKRK
2256260KKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.207710.0ovary
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Highly expressed in the early globular stage embryo before 2 days after pollination (DAP), as well as in the endosperm. At 3 DAP, expression is down-regulated in the central region and in the center of the ventral region of the embryo, where the shoot subsequently forms, but weakly expressed in other regions until 4 DAP, and then disappears after 4 DAP. During transition between the inflorescence and floral phases, expressed in the inflorescence meristems but not in the floral meristem. {ECO:0000269|PubMed:10095070, ECO:0000269|PubMed:10488233}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10488233}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G106000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9649490.0EU964949.1 Zea mays clone 282742 KNOX1 domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021311666.10.0homeobox protein knotted-1-like 7 isoform X1
SwissprotQ948L51e-104KNOS7_ORYSJ; Homeobox protein knotted-1-like 7
TrEMBLA0A1Z5S5650.0A0A1Z5S565_SORBI; Uncharacterized protein
STRINGSb01g009460.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150631819
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.12e-75KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Sato Y,Aoki Y,Matsuoka M
    A loss-of-function mutation in the rice KNOX type homeobox gene, OSH3.
    Plant Cell Physiol., 2002. 43(1): p. 44-51
    [PMID:11828021]
  2. Sato Y,Fukuda Y,Hirano HY
    Mutations that cause amino acid substitutions at the invariant positions in homeodomain of OSH3 KNOX protein suggest artificial selection during rice domestication.
    Genes Genet. Syst., 2001. 76(6): p. 381-92
    [PMID:11922107]