PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G112500.1.p
Common NameSb01g010020, SORBIDRAFT_01g010020
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ZF-HD
Protein Properties Length: 235aa    MW: 24354.2 Da    PI: 8.0309
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G112500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer86.62.7e-271263458
           ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                           +Y+eC++NhAa+lG++a DGC+E++p+   +g++aa+ CaACgCHRnFHR+  +
  Sobic.001G112500.1.p 12 EVYRECMRNHAAKLGTYASDGCCEYTPD---DGQPAAMLCAACGCHRNFHRKAFV 63
                          68*************************8...7899*****************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.2E-221361IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-201460IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.4E-211460IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152322.0761461IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.79E-16104178IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-27106179IPR009057Homeodomain-like
TIGRFAMsTIGR015651.4E-27116177IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MDQQQHQERP REVYRECMRN HAAKLGTYAS DGCCEYTPDD GQPAAMLCAA CGCHRNFHRK  60
AFVDAAAGAH VGGGGGAHGA MLPSPGVSPG YGMHHMAITA AGMGGGDAGG SGGSRRRTRT  120
KFTEEQKERM ARFAERLGWR MPKREPGRAP GDDEVGRFCR EIGVTRQVFK VWMHNHKAGV  180
GGSGGAGVGG AAQTSSSTTR GGGVGVVGAG GSLSPAMGAD VEDDEEVKGS EMCM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A6e-171151771773ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G112500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3699060.0AF369906.1 Sorghum bicolor clone BAC10J22 Sbb3766 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466561.11e-169zinc-finger homeodomain protein 11
SwissprotA2XLF41e-91ZHD11_ORYSI; Zinc-finger homeodomain protein 11
SwissprotQ10DV51e-91ZHD11_ORYSJ; Zinc-finger homeodomain protein 11
TrEMBLC5WMZ91e-168C5WMZ9_SORBI; Uncharacterized protein
STRINGSb01g010020.11e-169(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92043243
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.12e-33homeobox protein 22