PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.001G119700.1.p

Common Name

Sb01g010570, SORBIDRAFT_01g010570

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

GeBP

Protein Properties

Length: 377aa MW: 40277 Da PI: 7.1032

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.001G119700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	84.3	1.7e-26	86	180	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkife 90 +fqr+wse+De+ +LqGl+ + +g d++ fy+ +++s+ +++ ql+eK+rrLK+Kf+ ++++++ g +p+ ++hd+++++ Sobic.001G119700.1.p 86 KFQRIWSESDELRFLQGLLGC-GAQGLVFPRDLNVFYDRFSESMPQPYTRAQLSEKLRRLKNKFRSMSARVAGGLDPARLAPHDRDVLH 173 79*****************.556878888****************************************************** PP DUF573 91 lskkiWg 97 l++++W+ Sobic.001G119700.1.p 174 LCSRLWD 180 ****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	5.7E-24	87	180	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MASDQQALPV PVPVPVPPNP NPTAPADPTP PSASAARKLP IKRRSPRPSS SPPSSSSPTS 60 SDPLRAPAPG GGGGGGGSDQ QQPPFKFQRI WSESDELRFL QGLLGCGAQG LVFPRDLNVF 120 YDRFSESMPQ PYTRAQLSEK LRRLKNKFRS MSARVAGGLD PARLAPHDRD VLHLCSRLWD 180 PANAATSPFA ASAGASGNKR RRANPRGTPL LPPDASGDSN SHDYNGVGSS APGLFPDGSN 240 GEYMFYLEQE SGHLGDHEGA ALVADSRFGV VVQEQQPEAV VTLPNGNNGV GNEMNVECKM 300 VVPCSNEHRM ANAVLDVFEE CLREAKSNGI INGGNVDGRA EETELAKRWR AQRMDELDVL 360 SRRLRLLVEY AAATGQ*

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MASDQQALPV PVPVPVPPNP NPTAPADPTP PSASAARKLP IKRRSPRPSS SPPSSSSPTS  60
SDPLRAPAPG GGGGGGGSDQ QQPPFKFQRI WSESDELRFL QGLLGCGAQG LVFPRDLNVF  120
YDRFSESMPQ PYTRAQLSEK LRRLKNKFRS MSARVAGGLD PARLAPHDRD VLHLCSRLWD  180
PANAATSPFA ASAGASGNKR RRANPRGTPL LPPDASGDSN SHDYNGVGSS APGLFPDGSN  240
GEYMFYLEQE SGHLGDHEGA ALVADSRFGV VVQEQQPEAV VTLPNGNNGV GNEMNVECKM  300
VVPCSNEHRM ANAVLDVFEE CLREAKSNGI INGGNVDGRA EETELAKRWR AQRMDELDVL  360
SRRLRLLVEY AAATGQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.001G119700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU967779	0.0	EU967779.1 Zea mays clone 306034 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002464013.1	0.0	probable transcription factor At3g04930
Refseq	XP_021307245.1	0.0	probable transcription factor At3g04930
TrEMBL	C5WNQ3	0.0	C5WNQ3_SORBI; Uncharacterized protein
STRING	Sb01g010570.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8695	32	43
Representative plant	OGRP9800	9	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04930.2	5e-11	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Sobic.001G119700.1.p
Entrez Gene	8063399