PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G135400.1.p
Common NameSb01g011840, SORBIDRAFT_01g011840
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family GATA
Protein Properties Length: 304aa    MW: 32440 Da    PI: 4.3198
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G135400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.81.1e-16214250135
                  GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                           C+nCgt++  Tp +Rrgp g++tLCnaCGl+++ kg+
  Sobic.001G135400.1.p 214 CHNCGTSEkmTPAMRRGPAGPRTLCNACGLMWANKGT 250
                           **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.95773108IPR010399Tify domain
SMARTSM009794.3E-1073108IPR010399Tify domain
PfamPF062001.5E-1276107IPR010399Tify domain
PROSITE profilePS5101713.364142184IPR010402CCT domain
PfamPF062031.2E-14142182IPR010402CCT domain
SMARTSM004015.3E-11208261IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.71E-11211257No hitNo description
Gene3DG3DSA:3.30.50.105.9E-14213252IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.53E-16213269No hitNo description
PfamPF003202.5E-14214250IPR000679Zinc finger, GATA-type
PROSITE patternPS003440214241IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MPDTDVDTEM REAAAAAAGA PAGDDDGEGD TEEEEEEDED DEDEVDEDDE EELPAAAPAP  60
TEEQPAPAPI SALPGNPNQL TLVFQGEVYV FESVTPEKVQ AVLLLLGRGE LPPGLAGMVL  120
PNQNENKGYD DILRRTDIPA KRVASLIRFR EKRKERNFDK KIRYAVRKEV ALRMQRRKGQ  180
FAGRASLEGE SPSPGFDPGS QGSGLDFASR ESKCHNCGTS EKMTPAMRRG PAGPRTLCNA  240
CGLMWANKGT LRSCPKAKVE SPVVAIEQGI SDNKALVTPS NDNVAASNGE ATIAAEIGVP  300
KAP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.81330.0leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G135400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By drought and salt stresses. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0177620.0BT017762.1 Zea mays clone EL01N0501F08.c mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002464073.10.0GATA transcription factor 18
SwissprotQ10F251e-137GAT18_ORYSJ; GATA transcription factor 18
TrEMBLC5WPL50.0C5WPL5_SORBI; Uncharacterized protein
STRINGSb01g011840.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34603773
Representative plantOGRP8311661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.22e-60ZIM-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]