PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G137100.1.p
Common NameSb01g011960, SORBIDRAFT_01g011960
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family TALE
Protein Properties Length: 650aa    MW: 71786.4 Da    PI: 5.6829
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G137100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox277.8e-094014381954
                           HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
              Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                           Fe   ++yp+ +e+  L++++gLt +q+++WF N R +
  Sobic.001G137100.1.p 401 FEHflHPYPKDSEKIMLSRQTGLTRSQISNWFINARVR 438
                           664559******************************88 PP
2BELL120.76.5e-39264335172
                  BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                           e+qelq+k akL+ +l+eVd++Yk+y++q+q v+ssF++vag g+akpYt++Al++iSrhFrcLkdai +qi
  Sobic.001G137100.1.p 264 EKQELQNKMAKLMAMLDEVDRKYKHYYHQMQLVMSSFDMVAGSGAAKPYTAVALQTISRHFRCLKDAINDQI 335
                           689*******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.8E-57188333IPR006563POX domain
PfamPF075261.8E-50194331IPR006563POX domain
PROSITE profilePS5007112.001379442IPR001356Homeobox domain
SMARTSM003892.0E-9382446IPR001356Homeobox domain
CDDcd000866.55E-13382443No hitNo description
SuperFamilySSF466896.42E-17383448IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.3E-28385448IPR009057Homeodomain-like
PfamPF059201.2E-17399438IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MATYYSSPGS ERDSQTMYST ESGNASYPVP SALGNFLYPN NASSGPYTEF SGIVQPQQNF  60
MELTGHPSAM SHDSSSNEAT NMSTSLTEQR SFGPLKDMRN EMLMHLMDGA HSSGSDLIHN  120
DAHSTAQLEF GMLNNHNSSV PSAPGQGLSL SLNTHILAPS YPYWSAKQDL LTPNSYQGDD  180
NRMKNMQSEA SQAIRNSKYL KAAQELLDEI VSVWKSVKQK TDKGPAEAGK ADGKETDGGT  240
KSDGVSSDPQ ESGANAAAEL STAEKQELQN KMAKLMAMLD EVDRKYKHYY HQMQLVMSSF  300
DMVAGSGAAK PYTAVALQTI SRHFRCLKDA INDQISVIRK KLGEDDTTSG KEGKLTRLRY  360
IDQQIRQQRA FQQYGMLQQN AWRPQRGLPE NSVSILRAWL FEHFLHPYPK DSEKIMLSRQ  420
TGLTRSQISN WFINARVRLW KPMIEDMYKE EIGEAELDSN SSSDNGQRNR DKAPSSEEKE  480
DLKTSTSQVC QTSQLDESKA SVGGMMSFSG APAGGFHNEA NPDDSFMSLM LKAQRAGETD  540
GSGFLHDAVA HHSDESARFM AYHMAEFGRY GNNNVSLTLG LQHAENSLSV PPNTQPGFPG  600
VRDQDIYNAT APLNVASTSS EYDSASQIDQ QQQQRQRFEP SPLMHDFVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A8e-16388445158Homeobox protein Meis1
4xrs_B8e-16388445158Homeobox protein Meis1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.112880.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G137100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9571390.0EU957139.1 Zea mays clone 1583941 BEL1-related homeotic protein 30 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021320793.10.0BEL1-like homeodomain protein 7
RefseqXP_021320799.10.0BEL1-like homeodomain protein 7
TrEMBLC5WPM90.0C5WPM9_SORBI; Uncharacterized protein
STRINGSb01g011960.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90138131
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-117BEL1-like homeodomain 6