PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.001G139200.2.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

bZIP

Protein Properties

Length: 141aa MW: 15129.1 Da PI: 10.8524

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.001G139200.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34	6.3e-11	65	106	4	45
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 +r rr+++NRe+ArrsR+RK+ +++eL++ +++Le ++L Sobic.001G139200.2.p 65 ERRLRRRISNRESARRSRARKQRRLDELRDTAAVLERRGREL 106 5899*******************************9876666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	6.4E-8	60	108	No hit	No description
SMART	SM00338	1.2E-7	62	126	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.91	64	106	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.21E-7	66	109	No hit	No description
Pfam	PF00170	1.8E-7	66	104	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	69	84	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 141 aa Download sequence Send to blast
MDFSAGCMPC IDDIDMQVLA AMAATPPQVG FEFDPTASPF PAQPPATASP EVDTAAAGES 60 ESADERRLRR RISNRESARR SRARKQRRLD ELRDTAAVLE RRGRELAAGA RAARGRLALA 120 LLANAGLRAE AAVLSRRLAA S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	78	85	RRSRARKQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.001G139200.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002464089.2	4e-92	basic leucine zipper 43
TrEMBL	A0A1Z5S5X7	2e-90	A0A1Z5S5X7_SORBI; Uncharacterized protein (Fragment)
STRING	Sb01g012140.1	2e-72	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP20974	5	7

Link Out ? help Back to Top
Phytozome	Sobic.001G139200.2.p