PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G141100.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 337aa    MW: 36243.4 Da    PI: 6.5161
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G141100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.81.1e-14149195455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            h ++Er+RR++iN++f eL +++P +     kK++Ka+iL  A++Y+k+Lq
  Sobic.001G141100.2.p 149 DHIIAERKRREKINQRFIELSTVIPGL-----KKMDKATILLDATRYLKELQ 195
                           699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.942145194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-17149207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-18149206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-12149195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.18E-16150199No hitNo description
SMARTSM003531.8E-15151200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MEDSSLFMQW AMDTLQHENP ESAAGVAAVH GDFSEATFPS LKALREASQA AEMVQELIAG  60
ADVVRQAPNS WNSGDTTANC NVPAAGWNFG GATSTQQPGR NGMMAEAPVM ATRSRLPPPP  120
PDLVYGPPPI TRRAGLKSLG SMAASYAQDH IIAERKRREK INQRFIELST VIPGLKKMDK  180
ATILLDATRY LKELQEKLKD LEAGKSTDTE TLVLVKKPCL HAAAAWDGDG GSSLPAPPAG  240
TPTARKRLPE IEVRFSESEK SVVMRVHCEN RKGVVVNVLT EVEELHLRSI HANVMPFTAC  300
TCIITITAKV EEGFTVTTEE IVGRLNSALS LHAAPA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153158ERKRRE
2154159RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G141100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0399631e-48BT039963.1 Zea mays full-length cDNA clone ZM_BFc0054N17 mRNA, complete cds.
GenBankKJ7267861e-48KJ726786.1 Zea mays clone pUT2107 bHLH transcription factor (bHLH71) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466688.20.0transcription factor bHLH18
TrEMBLA0A1Z5S5K30.0A0A1Z5S5K3_SORBI; Uncharacterized protein
TrEMBLC5WQ910.0C5WQ91_SORBI; Uncharacterized protein
STRINGSb01g012280.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-23bHLH family protein