PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G148000.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 142aa    MW: 15123.7 Da    PI: 9.0457
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G148000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY70.62.3e-2244101258
                           --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTE.EEEEEES--SS CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkv.veitYegeHnh 58 
                           +Dgy+W+KYGqK +k+ +  rsY+rC ++ C +kkkve   +dp+  + i+Yeg H+h
  Sobic.001G148000.1.p  44 EDGYEWKKYGQKFIKNIQKIRSYFRCRHKLCGAKKKVEWHPRDPSGdLRIVYEGAHQH 101
                           7******************************************985499********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081117.78738104IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-2340104IPR003657WRKY domain
SuperFamilySSF1182901.24E-2040104IPR003657WRKY domain
SMARTSM007749.6E-2443103IPR003657WRKY domain
PfamPF031062.3E-2044101IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MDSSSQPGAI GSGGGGERNQ REEDEAAAAA AAEAGYGRQL VMPEDGYEWK KYGQKFIKNI  60
QKIRSYFRCR HKLCGAKKKV EWHPRDPSGD LRIVYEGAHQ HGAPAAAAPP GPGGQHHGGG  120
ASDFNRYELG AQYFGGAGRS H*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G148000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4662011e-130AF466201.1 Sorghum bicolor clone SBTXS_0032H17 putative cytochrome P450-like protein, putative DNA-binding protein homolog, TATA-binding protein, hypothetical protein M3E9.200, 3-glucanase, K-exchanger-like protein, small heat shock-like protein, methionine synthase protein, putative far-red impaired response protein, and putative vegetative storage protein genes, complete cds.
GenBankEU9706331e-130EU970633.1 Zea mays clone 348246 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002464130.24e-99probable WRKY transcription factor 58
TrEMBLA0A1B6QJ201e-97A0A1B6QJ20_SORBI; Uncharacterized protein
STRINGSb01g012870.17e-69(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101583444
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.11e-11zinc-dependent activator protein-1