PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.001G149000.3.p

Common Name

Sb01g012970, SORBIDRAFT_01g012970

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

FAR1

Protein Properties

Length: 1076aa MW: 116541 Da PI: 5.3747

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.001G149000.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	99.1	4.6e-31	86	189	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..............tekerrtraetrtgCkaklkvkkekdgkw 76 fYn YA++vGFs+r+s +++s+r+g++++r+fvC keg+r+ + k+ + rrtra+tr+gCka+++vkk+++g+w Sobic.001G149000.3.p 86 FYNVYAHRVGFSTRISVMHRSRRDGSVMSRQFVCAKEGFRTYRGKNevsradavdpgdddGGRGRRTRAVTRVGCKAMIRVKKQDNGRW 174 ********************************************************998999********************* PP FAR1 77 evtkleleHnHelap 91 vtkle+ HnH+l+p Sobic.001G149000.3.p 175 SVTKLETAHNHPLVP 189 **********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.3E-29	86	189	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.4E-20	308	397	IPR018289	MULE transposase domain
Pfam	PF04434	3.8E-9	581	618	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.744	583	621	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.1E-7	596	623	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1076 aa Download sequence Send to blast
MERGAGSEQG SPDSEMGDGD NDSVGYGAEM EVDAGSGSAG ASAPASSASA SASVSASAYA 60 ARAGAYDGVD PFEGMEFDDE EDAWTFYNVY AHRVGFSTRI SVMHRSRRDG SVMSRQFVCA 120 KEGFRTYRGK NEVSRADAVD PGDDDGGRGR RTRAVTRVGC KAMIRVKKQD NGRWSVTKLE 180 TAHNHPLVPA NQAHCLRPHK PLSECGKQRP FGGHRNGGSL LAIEPPPPPL TPPVPHTSIP 240 QVVPQYVSDG IGNGTRVILD YVKRMQAEDP AFFYAMQFVE GRPVGNVFWA DARARTAYKD 300 FGDAVVLDDY CKRSKHELPL VAFTGVNHHC QPVLFGCAIM AHNNEASFIW LFETFLLAMS 360 GQQPTSLTME HDNALKSAAL KVFPLTRLQF CKWHIMNEAQ DKLSYLLDAF PSFHEDFINC 420 VNMSDTINEF ETNWKALISK VSSQKTEWLD LVYNCRHQWV PVYLRDTFFG DVSLKLQCSS 480 RSSLFEGYIS AKTDSQSFIQ QYEKALDCCY EKEVKEEFET KYSLPDIKTP SPIEKQGAEL 540 YTRSMFLKFQ QELIDASVYT AEMVKEVGNA SVYTVTRSEG SEKSVTVEFS SSGSSATCSC 600 RMFEYFGIVC RHILTVFGVR GVSALPSHYF VKRWTKNALD RSSGKNVDEV SRVEEPKEEQ 660 RSSAEDDEQS LTWRYNSLCR EALRYAEEGA SSLEVYIVAM QALQEAANRV NMAKRGIGQV 720 APLAVMPIAA QPPESFARNQ GIISNKQKKR KRNSNSSREN ATSNQLMYVQ QPVNFLFVAP 780 GPGSSSALQG PSQLVAAAPV SLSSKYGQTS GANNSVDDNI PPASVVDKFS GLPDRNASAP 840 STGNLQGGET KSIGADLRIK ESHELSQANG SRGCSVNTLN SSAVPQLVTV PIGLCLPSTD 900 ASKISAAGMN SVNSGDISSN GKLSFGQSQS SAQQPATPSQ TKTLDRIDSR ANPEGSSIRA 960 AAIAAGARIA SPSDAATIIK AAQSKGAIHI RPGENLPNYL KPLAPKPLSS LPPVNPLSSA 1020 HASPGQHSFG DSAAAKDAIF GSSDGSDDDE EDTDDEEDTD DDEDEGLTGD DAEHE*

Sequence ? help Back to Top

Protein Sequence Length: 1076 aa Download sequence Send to blast

MERGAGSEQG SPDSEMGDGD NDSVGYGAEM EVDAGSGSAG ASAPASSASA SASVSASAYA  60
ARAGAYDGVD PFEGMEFDDE EDAWTFYNVY AHRVGFSTRI SVMHRSRRDG SVMSRQFVCA  120
KEGFRTYRGK NEVSRADAVD PGDDDGGRGR RTRAVTRVGC KAMIRVKKQD NGRWSVTKLE  180
TAHNHPLVPA NQAHCLRPHK PLSECGKQRP FGGHRNGGSL LAIEPPPPPL TPPVPHTSIP  240
QVVPQYVSDG IGNGTRVILD YVKRMQAEDP AFFYAMQFVE GRPVGNVFWA DARARTAYKD  300
FGDAVVLDDY CKRSKHELPL VAFTGVNHHC QPVLFGCAIM AHNNEASFIW LFETFLLAMS  360
GQQPTSLTME HDNALKSAAL KVFPLTRLQF CKWHIMNEAQ DKLSYLLDAF PSFHEDFINC  420
VNMSDTINEF ETNWKALISK VSSQKTEWLD LVYNCRHQWV PVYLRDTFFG DVSLKLQCSS  480
RSSLFEGYIS AKTDSQSFIQ QYEKALDCCY EKEVKEEFET KYSLPDIKTP SPIEKQGAEL  540
YTRSMFLKFQ QELIDASVYT AEMVKEVGNA SVYTVTRSEG SEKSVTVEFS SSGSSATCSC  600
RMFEYFGIVC RHILTVFGVR GVSALPSHYF VKRWTKNALD RSSGKNVDEV SRVEEPKEEQ  660
RSSAEDDEQS LTWRYNSLCR EALRYAEEGA SSLEVYIVAM QALQEAANRV NMAKRGIGQV  720
APLAVMPIAA QPPESFARNQ GIISNKQKKR KRNSNSSREN ATSNQLMYVQ QPVNFLFVAP  780
GPGSSSALQG PSQLVAAAPV SLSSKYGQTS GANNSVDDNI PPASVVDKFS GLPDRNASAP  840
STGNLQGGET KSIGADLRIK ESHELSQANG SRGCSVNTLN SSAVPQLVTV PIGLCLPSTD  900
ASKISAAGMN SVNSGDISSN GKLSFGQSQS SAQQPATPSQ TKTLDRIDSR ANPEGSSIRA  960
AAIAAGARIA SPSDAATIIK AAQSKGAIHI RPGENLPNYL KPLAPKPLSS LPPVNPLSSA  1020
HASPGQHSFG DSAAAKDAIF GSSDGSDDDE EDTDDEEDTD DDEDEGLTGD DAEHE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.001G149000.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF466201	0.0	AF466201.1 Sorghum bicolor clone SBTXS_0032H17 putative cytochrome P450-like protein, putative DNA-binding protein homolog, TATA-binding protein, hypothetical protein M3E9.200, 3-glucanase, K-exchanger-like protein, small heat shock-like protein, methionine synthase protein, putative far-red impaired response protein, and putative vegetative storage protein genes, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021306406.1	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A1Z5S5M8	0.0	A0A1Z5S5M8_SORBI; Uncharacterized protein
TrEMBL	A0A1Z5S5P7	0.0	A0A1Z5S5P7_SORBI; Uncharacterized protein
STRING	Sb01g012970.1	0.0	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-163	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Sobic.001G149000.3.p
Entrez Gene	8056771