PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G150650.1.p
Common NameSb01g013080, SORBIDRAFT_01g013080
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family G2-like
Protein Properties Length: 113aa    MW: 12406.3 Da    PI: 8.7542
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G150650.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like65.31.1e-203589455
               G2-like  4 lrWtpeLHerFveaveqLGGsekAtPkti...lelmkvkgLtlehvkSHLQkYRl 55
                          lrW+ +LH  Fv+av+  GG++ A P ++   +e+m+v gLt++++kSHLQ+YR 
  Sobic.001G150650.1.p 35 LRWSDDLHMIFVKAVAYQGGPHDAKPAAVqktMEAMGVRGLTIKKIKSHLQRYRE 89
                          89************************998333566789****************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.55E-102990IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.2E-193289IPR009057Homeodomain-like
TIGRFAMsTIGR015573.7E-153590IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
IMSNNEPAHS NDVPDMSSMA ASRIIWAMQP TRSFLRWSDD LHMIFVKAVA YQGGPHDAKP  60
AAVQKTMEAM GVRGLTIKKI KSHLQRYREK CVLGPEAPDD IPCTTSSIAA APN
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G150650.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021306319.12e-80myb family transcription factor PHL12-like isoform X1
RefseqXP_021306322.12e-80myb family transcription factor PHL12-like isoform X1
RefseqXP_021306325.12e-80myb family transcription factor PHL12-like isoform X1
TrEMBLA0A1Z5S5P42e-79A0A1Z5S5P4_SORBI; Uncharacterized protein (Fragment)
STRINGSb01g013080.13e-76(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154991216
Representative plantOGRP1768222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13640.13e-14G2-like family protein