PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G152901.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family YABBY
Protein Properties Length: 183aa    MW: 20450.1 Da    PI: 10.8063
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G152901.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY123.33.7e-38101156115170
                 YABBY 115 virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                             r PekrqrvPsaynrfikeei+rikasnPdishreafs+aaknWahfP+ihfgl
  Sobic.001G152901.1.p 101 NSRAPEKRQRVPSAYNRFIKEEIRRIKASNPDISHREAFSTAAKNWAHFPNIHFGL 156
                           4799**************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046904.1E-3795156IPR006780YABBY protein
Gene3DG3DSA:1.10.30.103.1E-5103150IPR009071High mobility group box domain
SuperFamilySSF470955.24E-8103150IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
NPFRHVQRGP NNSLWHFAPS TQAHKELKNR EKPLRSLSLS LSLTHKHTQI SSSISPLSFT  60
SLYLQAVCTT QGEKSRRNVG PADRAGAGAC VLRALQLLQY NSRAPEKRQR VPSAYNRFIK  120
EEIRRIKASN PDISHREAFS TAAKNWAHFP NIHFGLGPYE SSNKLDEAIG ATGHPQKVQD  180
LY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G152901.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0420108e-95BT042010.1 Zea mays full-length cDNA clone ZM_BFb0106K19 mRNA, complete cds.
GenBankEU9610388e-95EU961038.1 Zea mays clone 230628 axial regulator YABBY2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1Z5S5P81e-132A0A1Z5S5P8_SORBI; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139437121
Representative plantOGRP22101236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.25e-31YABBY family protein