PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G159500.2.p
Common NameSb01g013900, SORBIDRAFT_01g013900
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family CPP
Protein Properties Length: 655aa    MW: 70989.4 Da    PI: 7.7016
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G159500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR43.65.8e-14355394241
                   TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                           ++++C+CkkskClk+YC Cfaa+++Cse C+C++C+N++ 
  Sobic.001G159500.2.p 355 SCRHCSCKKSKCLKLYCACFAAKVYCSEFCSCQGCSNNHM 394
                           689**********************************986 PP
2TCR50.44.4e-16440479140
                   TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                           ++k+gCnC+ks+ClkkYCeCf++g+ Cs +C+Ce+CkN+ 
  Sobic.001G159500.2.p 440 RHKRGCNCRKSSCLKKYCECFQSGVGCSISCRCESCKNSF 479
                           589***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.7E-16354395IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163434.978355480IPR005172CRC domain
PfamPF036382.9E-10357392IPR005172CRC domain
SMARTSM011144.9E-15440481IPR033467Tesmin/TSO1-like CXC domain
PfamPF036387.7E-12442478IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MGTFSCIELS GSATLASENC ISYEDATNSP SKWLQSTPFG SETLGDAKKQ DTDGKTNHTE  60
DVEQVKQSST YSDQNGLDQV DSSTSGRIVQ ENELAKQDRN DLAPCSLNHL ITNCGTGNSV  120
ISISDLALEA QQRSWKLRGD NVISSTSVLA VDRNFENSPR EHFVEPFGSY IQSAADDTHV  180
YCADAAAGVA TNHDQEILPA VIQNQLVLND YNFDTFKANT DGTAISQQQC GTHRRNLFKD  240
KVGPSNKRVQ NNSNIHHAST CGNNYLKPVK PGIGLHLNTL PLNLSNMPLT INPPLLPEQT  300
SPATVISSSE TALYGSEVCT HVDDYSQKTM TNADKSDQQS HKKRRRKLQN DDGKSCRHCS  360
CKKSKCLKLY CACFAAKVYC SEFCSCQGCS NNHMHEEAVS HIRKQTESRN PLAFAPTVTR  420
KCGSVSELGD DSNNTPASAR HKRGCNCRKS SCLKKYCECF QSGVGCSISC RCESCKNSFG  480
KREGVLLLTT EKLKKGGEAK GTHGKEEKLA FDKHHMISQS GDLAATENLL ATPSLEPYRS  540
SFLLPSTCSK LPPSTVGLSS GLHNPRSPMK SDNLLSPFET RAAPMILGND FSDIQELGLS  600
CTTSVKVVSP NKKRVAPLHI GTALSPMGSS SRKLVLKSIP SFPSLTGDAD SEPH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-1235947714120Protein lin-54 homolog
5fd3_B1e-1235947714120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1341346KKRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G159500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021301675.10.0protein tesmin/TSO1-like CXC 3 isoform X1
TrEMBLC5WRA40.0C5WRA4_SORBI; Uncharacterized protein
STRINGSb01g013900.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.17e-59Tesmin/TSO1-like CXC domain-containing protein