PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G163800.2.p
Common NameSb01g014310, SORBIDRAFT_01g014310
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 341aa    MW: 37128.2 Da    PI: 8.4702
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G163800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM180.54.3e-5651301128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                           lppGfrFhPtdeelv++yL++kv++  + + ++i++vd++k+ePwdLp+k++ +ekewyfFs rd+ky+tg r+nrat+sgyWk+tgkd
  Sobic.001G163800.2.p   5 LPPGFRFHPTDEELVTYYLTRKVSDFAFAT-RAIADVDLNKCEPWDLPSKASMGEKEWYFFSMRDRKYPTGIRTNRATDSGYWKTTGKD 92 
                           79*************************999.89***************999999*********************************** PP

                   NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           ke+++  g lvg+kktLvfy+grapkg+kt+Wvmheyrl
  Sobic.001G163800.2.p  93 KEIFH-CGMLVGMKKTLVFYRGRAPKGQKTSWVMHEYRL 130
                           *****.99*****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.06E-643150IPR003441NAC domain
PROSITE profilePS5100559.8915150IPR003441NAC domain
PfamPF023652.7E-296130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MEEGLPPGFR FHPTDEELVT YYLTRKVSDF AFATRAIADV DLNKCEPWDL PSKASMGEKE  60
WYFFSMRDRK YPTGIRTNRA TDSGYWKTTG KDKEIFHCGM LVGMKKTLVF YRGRAPKGQK  120
TSWVMHEYRL QNKFPYKPNK EWVVCRVFKK CQVIKMRPPQ DSPTMGSPCH DAGNASLGEL  180
GELDVSSILG GLAAAAAHTS SGSPPGVLHH QGSAAAAESF VGAHNRPVDM SAYMSWMAAA  240
NQGAAAAAAM LPWATTTPPG LFGNVFAPNN HQLLQKPLPF AGGCSGQPRG LGGVVANNVV  300
VGSGEHAMFG SSVVKVGMEC DQQQQPEQQL GMDESTWRTF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-56515017165NO APICAL MERISTEM PROTEIN
1ut4_B2e-56515017165NO APICAL MERISTEM PROTEIN
1ut7_A2e-56515017165NO APICAL MERISTEM PROTEIN
1ut7_B2e-56515017165NO APICAL MERISTEM PROTEIN
4dul_A2e-56515017165NAC domain-containing protein 19
4dul_B2e-56515017165NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00364DAPTransfer from AT3G18400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G163800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3631710.0AK363171.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2013D22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466794.10.0protein CUP-SHAPED COTYLEDON 1
TrEMBLA0A1Z5S6G80.0A0A1Z5S6G8_SORBI; Uncharacterized protein
STRINGSb01g014310.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.11e-91NAC domain containing protein 58