PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G164500.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family G2-like
Protein Properties Length: 428aa    MW: 46162.4 Da    PI: 10.5369
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G164500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1001.6e-31122175255
               G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           pr+rWt+ LH++Fv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Sobic.001G164500.1.p 122 PRMRWTTALHAHFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 175
                           9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-28119175IPR009057Homeodomain-like
SuperFamilySSF466892.69E-15119175IPR009057Homeodomain-like
TIGRFAMsTIGR015575.8E-23122175IPR006447Myb domain, plants
PfamPF002493.7E-7123174IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MATTAAPPDL SLHIRPPSPP DDARNSGGGG GGGHRQANHE TDVFFAKQTL CLGLVETTTT  60
TTTTTAQQDG QCDIQQQQQP QRLHQPSQIQ KFKKSSSAAL SGGTTRSGNG GSGGGKRSSR  120
APRMRWTTAL HAHFVHAVEL LGGHERATPK SVLELMNVKD LTLAHVKSHL QMYRTVKGTT  180
ADRSCAAGHV QMMRDMGFLQ RGCEMNGFEA FSNSTSNATA NIRMQQAAAG SPAGKQEVAW  240
FLRPPSFAHQ SGAVPLPLPC PYLMSAHHNR YLLSQNQGWR ARGAQQDAAA SQVLGQDNAA  300
RRLHPGFTDT AIRQRPSPWS AGVASRWSST TTTAAAAVPS PSSGRSSISS TEQPACSWTT  360
MTNKHHHQQH QQQQQQVSST IAVPNLEISL GRQGWQHNLQ DHHQQQQQQQ RSGESTAPKE  420
LTLLKCL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A8e-16123177357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-16123177357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-16123177357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-16123177357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G164500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0373981e-178BT037398.1 Zea mays full-length cDNA clone ZM_BFb0167O11 mRNA, complete cds.
GenBankKJ7268281e-178KJ726828.1 Zea mays clone pUT3368 G2-like transcription factor (GLK23) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021317382.10.0two-component response regulator ORR23
TrEMBLC5WS760.0C5WS76_SORBI; Uncharacterized protein
STRINGGRMZM2G039074_P021e-161(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37423168
Representative plantOGRP1584333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.12e-32G2-like family protein