PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.001G164800.1.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

Protein Properties

Length: 377aa MW: 42565.9 Da PI: 7.1038

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.001G164800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	60.3	3.3e-19	39	119	13	99
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + +++p +fa++++g s ++l+++sg++W++ + +++vl++GWkeFv+a+ ++egD ++Fk++g s+f v vf++ Sobic.001G164800.1.p 39 TETMSIPARFANNFNGH--ISEVISLKSPSGKTWSIGV--GSDTDEVVLQSGWKEFVSAHSIDEGDCMLFKYTGVSSF--DVLVFDS 119 4569*****888666..6779***********..999999*************************99999..8888876 PP
2	B3	46	9.2e-15	266	360	2	94
EEE-..-HHHHT..T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.. CS B3 2 fkvltpsdvlks..grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.. 85 ++v+ p +v ++ g + ++ +fa+++ g +s++++le s +W v+++ ++ s+ + ++GW+eFv +ngL + D+++F+l+ Sobic.001G164800.1.p 266 VQVMHPTHVRSTkpGVVGISAEFADKYLGA--TSRDVILEKgGSKGKWHVRYNRNRFSR-GLTGRGWSEFVADNGLLAHDVCLFELMvi 351 556655555555558889*******666..56689999967779**5444444.57789******************6532 PP .SSSEE..EE CS B3 86 .grsefelvv 94 g + ++++v Sobic.001G164800.1.p 352 nG-KLRRPTV 360 23.4444443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	6.08E-24	25	126	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	8.3E-24	25	122	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	14.776	27	120	IPR003340	B3 DNA binding domain
CDD	cd10017	1.13E-18	28	118	No hit	No description
SMART	SM01019	1.4E-9	30	120	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.7E-16	39	118	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	6.08E-17	259	366	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.7E-19	259	366	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.51E-13	263	366	No hit	No description
SMART	SM01019	4.3E-8	265	368	IPR003340	B3 DNA binding domain
Pfam	PF02362	9.5E-12	266	362	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.574	267	368	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005773	Cellular Component	vacuole
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MKNLDKNCRI CMEWQEHYYW NHMADDKKHF FKPMVGDFTE TMSIPARFAN NFNGHISEVI 60 SLKSPSGKTW SIGVGSDTDE VVLQSGWKEF VSAHSIDEGD CMLFKYTGVS SFDVLVFDSS 120 GCEKTWPHFT RNSSHGYKRI ESSAGLEEGP RLGCRRFKGG HDCTCTPQSL PSDGDDDDDD 180 AHLELALHRS TSRSIPKRCK RKLYRDIEQV HGEVKDDDDE DDVGDAKTGY YFCKNGPVSE 240 YHLKEQEKEE ISSIRVPVEP RNPVFVQVMH PTHVRSTKPG VVGISAEFAD KYLGATSRDV 300 ILEKGGSKGK WHVRYNRNRF SRGLTGRGWS EFVADNGLLA HDVCLFELMV INGKLRRPTV 360 TVHVLRKVRG AFVLLP*

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MKNLDKNCRI CMEWQEHYYW NHMADDKKHF FKPMVGDFTE TMSIPARFAN NFNGHISEVI  60
SLKSPSGKTW SIGVGSDTDE VVLQSGWKEF VSAHSIDEGD CMLFKYTGVS SFDVLVFDSS  120
GCEKTWPHFT RNSSHGYKRI ESSAGLEEGP RLGCRRFKGG HDCTCTPQSL PSDGDDDDDD  180
AHLELALHRS TSRSIPKRCK RKLYRDIEQV HGEVKDDDDE DDVGDAKTGY YFCKNGPVSE  240
YHLKEQEKEE ISSIRVPVEP RNPVFVQVMH PTHVRSTKPG VVGISAEFAD KYLGATSRDV  300
ILEKGGSKGK WHVRYNRNRF SRGLTGRGWS EFVADNGLLA HDVCLFELMV INGKLRRPTV  360
TVHVLRKVRG AFVLLP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	195	202	PKRCKRKL

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00468	DAP	Transfer from AT4G33280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.001G164800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002466799.2	0.0	B3 domain-containing protein Os03g0622200
Swissprot	Q10GM3	1e-143	Y3222_ORYSJ; B3 domain-containing protein Os03g0622200
TrEMBL	A0A1B6QJA1	0.0	A0A1B6QJA1_SORBI; Uncharacterized protein
STRING	Sb01g014370.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP562	34	179
Representative plant	OGRP6299	8	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	9e-25	B3 family protein

Link Out ? help Back to Top
Phytozome	Sobic.001G164800.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]