PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G165100.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family B3
Protein Properties Length: 331aa    MW: 37441 Da    PI: 9.2787
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G165100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.68.1e-17521311297
                           HTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                    B3  12 ksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                            + rl +p kf  +h  g++   +  ++le++ g +++ ++   k+ g++vl++GWkeFv a++L+ gDf+vFk dg+s+   +v +f
  Sobic.001G165100.1.p  52 FRERLAVPDKFE-QHfrGLI---GNRVKLESRCGHTFDAEV--AKNLGKVVLQTGWKEFVTAHDLNMGDFLVFKCDGTSRL--KVFIF 131
                           456899*****6.5556555...457***************..*******************************7775554..66665 PP
2B349.95.8e-162433291199
                           HHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE...EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                    B3  11 lksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy.rkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                           +++  + +p+ +a+ h       e++tl+l +  g+sW+v++i  +++++r   l++GWk+F+++n+L++gD ++F+l ++++ +++v+
  Sobic.001G165100.1.p 243 GSQ-AMDIPRVYADVHlpF----ENQTLML-QCCGQSWDVRCIThKGRPNRgKSLSQGWKQFARDNKLQVGDLCLFELLENTKYTMNVH 325
                           444.499999999888432....3335665.569********7765555556789************************99******** PP

                           EE-S CS
                    B3  96 vfrk 99 
                           ++r+
  Sobic.001G165100.1.p 326 IIRA 329
                           *996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.82941134IPR003340B3 DNA binding domain
SuperFamilySSF1019361.57E-2141141IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.3E-2242146IPR015300DNA-binding pseudobarrel domain
CDDcd100178.59E-2142132No hitNo description
SMARTSM010191.1E-544134IPR003340B3 DNA binding domain
PfamPF023627.9E-1545131IPR003340B3 DNA binding domain
SuperFamilySSF1019369.16E-20224329IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-22224329IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.942232330IPR003340B3 DNA binding domain
CDDcd100173.81E-16234328No hitNo description
SMARTSM010194.9E-8235330IPR003340B3 DNA binding domain
PfamPF023622.6E-14244329IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MFVIIKGWGL ASEEGAEMSK PGKRSKESNA YFYPDDKDGK DKYFFKVLVG EFRERLAVPD  60
KFEQHFRGLI GNRVKLESRC GHTFDAEVAK NLGKVVLQTG WKEFVTAHDL NMGDFLVFKC  120
DGTSRLKVFI FDLSCCEKVP PCRVKRNHIC GRETREINTE TSSTCGDLPL NVTASSSTSP  180
SDSSGDSISP EDQKSHYVPG YILPRRTYLT CVQMKKLKER VRASTSTIPI YGCIVKKSNL  240
RRGSQAMDIP RVYADVHLPF ENQTLMLQCC GQSWDVRCIT HKGRPNRGKS LSQGWKQFAR  300
DNKLQVGDLC LFELLENTKY TMNVHIIRAK *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.188420.0panicle
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G165100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021307296.10.0putative B3 domain-containing protein Os03g0621600 isoform X1
TrEMBLA0A1B6QJA60.0A0A1B6QJA6_SORBI; Uncharacterized protein
STRINGSb01g014400.11e-176(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Representative plantOGRP5872421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-19B3 family protein