PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G165100.11.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family B3
Protein Properties Length: 284aa    MW: 31968.6 Da    PI: 9.7753
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G165100.11.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3536.1e-17511311197
                            HHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                     B3  11 lksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                              + rl +p kf  +h  g++   +  ++le++ g +++ ++   k+ g++vl++GWkeFv a++L+ gDf+vFk dg+s+   +v +
  Sobic.001G165100.11.p  51 EFRERLAVPDKFE-QHfrGLI---GNRVKLESRCGHTFDAEV--AKNLGKVVLQTGWKEFVTAHDLNMGDFLVFKCDGTSRL--KVFI 130
                            3456899*****6.5556555...457***************..*******************************7775554..6666 PP

                            E CS
                     B3  97 f 97 
                            f
  Sobic.001G165100.11.p 131 F 131
                            5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.82941134IPR003340B3 DNA binding domain
SuperFamilySSF1019361.75E-2141141IPR015300DNA-binding pseudobarrel domain
CDDcd100171.21E-2042132No hitNo description
Gene3DG3DSA:2.40.330.103.8E-2242146IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.1E-544134IPR003340B3 DNA binding domain
PfamPF023625.9E-1545131IPR003340B3 DNA binding domain
SuperFamilySSF1019369.22E-5237280IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-6238280IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.36240283IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MFVIIKGWGL ASEEGAEMSK PGKRSKESNA YFYPDDKDGK DKYFFKVLVG EFRERLAVPD  60
KFEQHFRGLI GNRVKLESRC GHTFDAEVAK NLGKVVLQTG WKEFVTAHDL NMGDFLVFKC  120
DGTSRLKVFI FDLSCCEKVP PCRVKRNHIC GRETREINTE TSSTCGDLPL NVTASSSTSP  180
SDSSGDSISP EDQKSHYVPG YILPRRTYLT CVQMKKLKER VRASTSTIPI YGCIVKKSNL  240
RRGSQAMSWD VRCITHKGRP NRGKSLSQGW KQFARDNKLQ SCN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.188420.0panicle
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G165100.11.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021307300.10.0putative B3 domain-containing protein Os03g0621600 isoform X4
TrEMBLA0A1Z5S5Y90.0A0A1Z5S5Y9_SORBI; Uncharacterized protein
STRINGSb01g014410.11e-154(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-12B3 family protein