PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G165100.13.p
Common NameSb01g014410, SORBIDRAFT_01g014410
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family B3
Protein Properties Length: 247aa    MW: 27702.6 Da    PI: 9.5653
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G165100.13.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.44.6e-17341141197
                            HHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                     B3  11 lksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                              + rl +p kf  +h  g++   +  ++le++ g +++ ++   k+ g++vl++GWkeFv a++L+ gDf+vFk dg+s+   +v +
  Sobic.001G165100.13.p  34 EFRERLAVPDKFE-QHfrGLI---GNRVKLESRCGHTFDAEV--AKNLGKVVLQTGWKEFVTAHDLNMGDFLVFKCDGTSRL--KVFI 113
                            3456899*****6.5556555...457***************..*******************************7775554..6666 PP

                            E CS
                     B3  97 f 97 
                            f
  Sobic.001G165100.13.p 114 F 114
                            6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.82924117IPR003340B3 DNA binding domain
SuperFamilySSF1019361.28E-2124124IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-2225129IPR015300DNA-binding pseudobarrel domain
CDDcd100176.57E-2125115No hitNo description
SMARTSM010191.1E-527117IPR003340B3 DNA binding domain
PfamPF023624.4E-1528114IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MSKPGKRSKE SNAYFYPDDK DGKDKYFFKV LVGEFRERLA VPDKFEQHFR GLIGNRVKLE  60
SRCGHTFDAE VAKNLGKVVL QTGWKEFVTA HDLNMGDFLV FKCDGTSRLK VFIFDLSCCE  120
KVPPCRVKRN HICGRETREI NTETSSTCGD LPLNVTASSS TSPSDSSGDS ISPEDQKSHY  180
VPGYILPRRT YLTCVQMKKL KERVRASTST IPIYGCIVKK SNLRRGSQAM GFPSFTRERA  240
TISETG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.188420.0panicle
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G165100.13.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021307298.11e-171putative B3 domain-containing protein Os03g0621600 isoform X3
RefseqXP_021307299.11e-171putative B3 domain-containing protein Os03g0621600 isoform X3
TrEMBLA0A1B6QJA20.0A0A1B6QJA2_SORBI; Uncharacterized protein
STRINGSb01g014410.11e-157(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-13B3 family protein