PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.001G165100.7.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

Protein Properties

Length: 306aa MW: 34567.7 Da PI: 9.728

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.001G165100.7.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	52.8	7e-17	52	131	12	97
HTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 12 ksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 + rl +p kf +h g++ + ++le++ g +++ ++ k+ g++vl++GWkeFv a++L+ gDf+vFk dg+s+ +v +f Sobic.001G165100.7.p 52 FRERLAVPDKFE-QHfrGLI---GNRVKLESRCGHTFDAEV--AKNLGKVVLQTGWKEFVTAHDLNMGDFLVFKCDGTSRL--KVFIF 131 456899***6.5556555...457***********..*****************************7775554..66665 PP
2	B3	43.8	4.7e-14	244	304	41	99
TTS-EEEEEE...EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 41 esgrsWevkliy.rkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++ sW+v++i +++++r l++GWk+F+++n+L++gD ++F+l ++++ +++v+++r+ Sobic.001G165100.7.p 244 SQAMSWDVRCIThKGRPNRgKSLSQGWKQFARDNKLQVGDLCLFELLENTKYTMNVHIIRA 304 55689***7765555556789********************99*******996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	11.829	41	134	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.31E-21	41	141	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.62E-20	42	132	No hit	No description
Gene3D	G3DSA:2.40.330.10	4.5E-22	42	146	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	1.1E-5	44	134	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.8E-15	45	131	IPR003340	B3 DNA binding domain
SMART	SM01019	0.0093	174	305	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	2.62E-13	238	304	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.7E-15	238	304	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	11.124	240	305	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.5E-12	244	304	IPR003340	B3 DNA binding domain
CDD	cd10017	3.72E-11	248	303	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MFVIIKGWGL ASEEGAEMSK PGKRSKESNA YFYPDDKDGK DKYFFKVLVG EFRERLAVPD 60 KFEQHFRGLI GNRVKLESRC GHTFDAEVAK NLGKVVLQTG WKEFVTAHDL NMGDFLVFKC 120 DGTSRLKVFI FDLSCCEKVP PCRVKRNHIC GRETREINTE TSSTCGDLPL NVTASSSTSP 180 SDSSGDSISP EDQKSHYVPG YILPRRTYLT CVQMKKLKER VRASTSTIPI YGCIVKKSNL 240 RRGSQAMSWD VRCITHKGRP NRGKSLSQGW KQFARDNKLQ VGDLCLFELL ENTKYTMNVH 300 IIRAK*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sbi.18842	0.0	panicle

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.001G165100.7.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021307300.1	0.0	putative B3 domain-containing protein Os03g0621600 isoform X4
TrEMBL	A0A1Z5S5Y0	0.0	A0A1Z5S5Y0_SORBI; Uncharacterized protein
STRING	Sb01g014400.1	1e-154	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	2e-12	B3 family protein

Link Out ? help Back to Top
Phytozome	Sobic.001G165100.7.p