PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G165100.9.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family B3
Protein Properties Length: 289aa    MW: 32748.6 Da    PI: 9.9158
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G165100.9.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3536.3e-17341141197
                           HHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                    B3  11 lksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                             + rl +p kf  +h  g++   +  ++le++ g +++ ++   k+ g++vl++GWkeFv a++L+ gDf+vFk dg+s+   +v +f
  Sobic.001G165100.9.p  34 EFRERLAVPDKFE-QHfrGLI---GNRVKLESRCGHTFDAEV--AKNLGKVVLQTGWKEFVTAHDLNMGDFLVFKCDGTSRL--KVFIF 114
                           3456899*****6.5556555...457***************..*******************************7775554..66665 PP
2B343.94.2e-142272874199
                           TTS-EEEEEE...EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                    B3  41 esgrsWevkliy.rkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                           ++  sW+v++i  +++++r   l++GWk+F+++n+L++gD ++F+l ++++ +++v+++r+
  Sobic.001G165100.9.p 227 SQAMSWDVRCIThKGRPNRgKSLSQGWKQFARDNKLQVGDLCLFELLENTKYTMNVHIIRA 287
                           55689*****7765555556789************************99*********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.82924117IPR003340B3 DNA binding domain
SuperFamilySSF1019361.2E-2124124IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.0E-2225129IPR015300DNA-binding pseudobarrel domain
CDDcd100171.68E-2025115No hitNo description
SMARTSM010191.1E-527117IPR003340B3 DNA binding domain
PfamPF023626.1E-1528114IPR003340B3 DNA binding domain
SMARTSM010190.0093157288IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-13221287IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-15221287IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.124223288IPR003340B3 DNA binding domain
PfamPF023624.1E-12227287IPR003340B3 DNA binding domain
CDDcd100173.49E-11231286No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MSKPGKRSKE SNAYFYPDDK DGKDKYFFKV LVGEFRERLA VPDKFEQHFR GLIGNRVKLE  60
SRCGHTFDAE VAKNLGKVVL QTGWKEFVTA HDLNMGDFLV FKCDGTSRLK VFIFDLSCCE  120
KVPPCRVKRN HICGRETREI NTETSSTCGD LPLNVTASSS TSPSDSSGDS ISPEDQKSHY  180
VPGYILPRRT YLTCVQMKKL KERVRASTST IPIYGCIVKK SNLRRGSQAM SWDVRCITHK  240
GRPNRGKSLS QGWKQFARDN KLQVGDLCLF ELLENTKYTM NVHIIRAK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.188420.0panicle
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G165100.9.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021307300.10.0putative B3 domain-containing protein Os03g0621600 isoform X4
TrEMBLA0A1Z5S5X60.0A0A1Z5S5X6_SORBI; Uncharacterized protein
TrEMBLA0A1Z5S5Y00.0A0A1Z5S5Y0_SORBI; Uncharacterized protein
STRINGSb01g014400.11e-154(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-12B3 family protein