PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G165500.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family B3
Protein Properties Length: 555aa    MW: 61898.5 Da    PI: 8.974
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G165500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.51.1e-1330117598
                           -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                    B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                           l+p +++ ++ +++p +f++++gg+   s  + +e+++g ++ vk    k+ ++++ + GWk Fv+a+ ++++D+++F+++++ +f  +
  Sobic.001G165500.2.p  30 LMPMSANYRHSMTMPVRFMNQFGGE--ISESMDIESPDGSVYAVKG--IKYMNKMLPQCGWKAFVDAHPIDQNDSLLFQHIEKARF--K 112
                           67888889999********999988..56679999***********..9******************************8875555..8 PP

                           EEEE- CS
                    B3  94 vkvfr 98 
                           v +++
  Sobic.001G165500.2.p 113 VLIID 117
                           87776 PP
2B345.11.8e-142523361597
                           -EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TT.HHHHHHHHT--TT-EEEEE.E-SS.SEE..EEEEE CS
                    B3  15 rlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkG.WkeFvkangLkegDfvvFk.ldgr.sefelvvkvf 97 
                            lv+p  +a++h     +++ +tl+   ++++W  +l++rk +++++l++  W++Fv++n+++egD+++F+ l+     f+l+v+++
  Sobic.001G165500.2.p 252 TLVIPHAYAAAHFPY--KNQVVTLQRpGKSKKWHPRLNVRKDRSSHMLSGVpWSHFVQDNHVQEGDICIFQpLKTAgVWFTLMVHLI 336
                           69**********533..3447999995666*******999999999999435*******************6555568888888876 PP
3B337.15.7e-12468553999
                           HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEE CS
                    B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvk 95 
                            v+++++l++ k++ +++ +++ e++   +++ ++ sW+v++    ++    l +GW++F+++n+Lk  D+++F+l+ ++ +  +++v 
  Sobic.001G165500.2.p 468 AVTSTCILYFGKEYSSKY-LPHGEHTVTLVRNGKSVSWKVTM--HAQK----LIQGWRGFARDNRLKLDDICLFQLTkDDiKMLTMTVY 549
                           5788999*******9999.3334444455577999*******..6666....667********************99555788888888 PP

                           EE-S CS
                    B3  96 vfrk 99 
                           ++r+
  Sobic.001G165500.2.p 550 IIRH 553
                           8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.71E-1623121IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.1E-1525121IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.34826119IPR003340B3 DNA binding domain
SMARTSM010190.002529119IPR003340B3 DNA binding domain
PfamPF023625.8E-1130117IPR003340B3 DNA binding domain
CDDcd100173.35E-1030117No hitNo description
Gene3DG3DSA:2.40.330.102.0E-18229335IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.14E-17231329IPR015300DNA-binding pseudobarrel domain
CDDcd100175.53E-16237336No hitNo description
SMARTSM010192.3E-6237339IPR003340B3 DNA binding domain
PROSITE profilePS5086310.701238339IPR003340B3 DNA binding domain
PfamPF023623.1E-13252337IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-15450552IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.24E-16451552IPR015300DNA-binding pseudobarrel domain
CDDcd100174.46E-14456552No hitNo description
SMARTSM010190.0027458554IPR003340B3 DNA binding domain
PROSITE profilePS508639.812460554IPR003340B3 DNA binding domain
PfamPF023621.5E-9468553IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MAGQGPQVKK SCACCKMYKD HLHGKMKCFL MPMSANYRHS MTMPVRFMNQ FGGEISESMD  60
IESPDGSVYA VKGIKYMNKM LPQCGWKAFV DAHPIDQNDS LLFQHIEKAR FKVLIIDPDG  120
CEKVFPCNGI RISSSNIQER DKDYVDVSDS AHDRTKKLSR VRKRVSNCQG DCASQRRKAA  180
RITTDSASSS EESGFDDDPK TNAAPDYVLS CTSILSDEQE EQVDGLIKQI QPETTVFVAL  240
IKPGNVKPRR PTLVIPHAYA AAHFPYKNQV VTLQRPGKSK KWHPRLNVRK DRSSHMLSGV  300
PWSHFVQDNH VQEGDICIFQ PLKTAGVWFT LMVHLIHQSK VGTLLHDEKN GNSPSPAGGT  360
SSNRGRTMRS KANDLKIVHP NDGKAEAEVT PIARVKEEPA HQGPSNSKGH WTDDESGDSG  420
GPSEAGLYIL SAHAHLTDEQ RNKVEDIVGS IQSQVPIYVA VMNKSSVAVT STCILYFGKE  480
YSSKYLPHGE HTVTLVRNGK SVSWKVTMHA QKLIQGWRGF ARDNRLKLDD ICLFQLTKDD  540
IKMLTMTVYI IRHV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G165500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1B6QJB20.0A0A1B6QJB2_SORBI; Uncharacterized protein
STRINGPavir.Ia01274.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Representative plantOGRP1584433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-14B3 family protein