PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G165700.2.p
Common NameSb01g014480, SORBIDRAFT_01g014480
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family B3
Protein Properties Length: 514aa    MW: 58138.4 Da    PI: 7.5737
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G165700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.83e-112333031687
                           EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                    B3  16 lvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                           l + +++a++h  +  +sk +tle+  ++++W  k+  r  s+ y+l + W +Fv++n+++egD++++  +++
  Sobic.001G165700.2.p 233 LGITRDYASAHFPD--GSKHVTLETpGKSKKWHPKFYRRDESRNYMLIGQWLDFVRDNHVQEGDICLLVPTKD 303
                           66889999999633..7789*****5566*******55667777**********************9985543 PP
2B345.31.5e-144535104299
                           TS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                    B3  42 sgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                            g++W+ k+ + +++++ +l +GW +F++ ngL++gD+++F+l+++ s+ ++ v+++rk
  Sobic.001G165700.2.p 453 GGKTWKAKMMFHNGRRW-FLNGGWPNFARGNGLRVGDICLFELKKKeSKLTMAVHIIRK 510
                           68*******98888877.6999**********************888*********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.84E-7353IPR011011Zinc finger, FYVE/PHD-type
PROSITE patternPS013590550IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:3.30.40.103.4E-8554IPR013083Zinc finger, RING/FYVE/PHD-type
Gene3DG3DSA:2.40.330.102.1E-16209314IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-16211311IPR015300DNA-binding pseudobarrel domain
CDDcd100171.64E-16216314No hitNo description
SMARTSM010190.0014217317IPR003340B3 DNA binding domain
PROSITE profilePS508639.869218317IPR003340B3 DNA binding domain
PfamPF023623.3E-9233303IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.0E-19405510IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-17406510IPR015300DNA-binding pseudobarrel domain
CDDcd100171.52E-17411509No hitNo description
SMARTSM010190.0012413511IPR003340B3 DNA binding domain
PfamPF023622.1E-12453510IPR003340B3 DNA binding domain
PROSITE profilePS5086312.407454511IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MNIVCEVCGD IGFRQLLLCC RDCKRYAVHQ YCLDKVVFDA SLIEWFCYEC QQRRGEVTCI  60
RSLEQVSSEG PLSHGQFGTL VHQLTTKRVE SVRDAGPYSP NGGCDELFSC PGIENIPRVR  120
ERSVDPINIS RISEHDTTQA SASSERSTEC QTASSCRREK TAKMAMASSS SEESGEDILS  180
EKEFLEYVLA YRCYLSKAQK KRVMELIQEI QPEFTIFISI MRRGNVQPPG PFLGITRDYA  240
SAHFPDGSKH VTLETPGKSK KWHPKFYRRD ESRNYMLIGQ WLDFVRDNHV QEGDICLLVP  300
TKDEIRCTFM VYVLHEATHS RGGAGFQMGG PFPGASSAHM ASEIHIEEEP IAGEHVSSES  360
DMQEIPHEPL EGGDSDDQFV PPYIVPCKSP LSKSQKRIVE ERVRAIRSEI PICVAVMKNN  420
NVGVAQRWML ELGSRYGSVY LPTKGQNIWL QCGGKTWKAK MMFHNGRRWF LNGGWPNFAR  480
GNGLRVGDIC LFELKKKESK LTMAVHIIRK EKF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.55320.0pollen
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G165700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466812.10.0B3 domain-containing protein Os03g0619800
TrEMBLC5WS980.0C5WS98_SORBI; Uncharacterized protein
STRINGSb01g014480.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31650.14e-06B3 family protein