PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G165901.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family B3
Protein Properties Length: 98aa    MW: 11337.3 Da    PI: 9.7061
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G165901.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.92e-1437924197
                          TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
                    B3 41 esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97
                             + W+  +    +++r++l +GW +Fv++n+L  gD+++F+l+++ +e +++v+++
  Sobic.001G165901.1.p 37 CGRNIWKASM--VTYRQRHYLCGGWHKFVRDNDLSLGDICLFELKRNeRELTMMVHII 92
                          45589*****..999******************************9989999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.0077195IPR003340B3 DNA binding domain
CDDcd100173.87E-12193No hitNo description
PROSITE profilePS5086310.912195IPR003340B3 DNA binding domain
SuperFamilySSF1019363.27E-171393IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-161492IPR015300DNA-binding pseudobarrel domain
PfamPF023629.3E-123292IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MRQFSLGISR KPVLELGSRY ATAVNLPNGE QAVVLWCGRN IWKASMVTYR QRHYLCGGWH  60
KFVRDNDLSL GDICLFELKR NERELTMMVH IIPMKEL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G165901.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021313020.14e-69B3 domain-containing protein Os03g0619600-like
SwissprotQ6AV225e-17Y3196_ORYSJ; B3 domain-containing protein Os03g0619600
TrEMBLA0A1Z5S6125e-67A0A1Z5S612_SORBI; Uncharacterized protein
STRINGPavir.Ib02115.1.p6e-24(Panicum virgatum)
STRINGPavir.Ib02116.1.p3e-24(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06220.13e-07B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]