PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G166100.7.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family B3
Protein Properties Length: 1144aa    MW: 129410 Da    PI: 9.4774
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G166100.7.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.63.6e-1634122599
                           -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                    B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                           l+p  +++++ +v+pk+f++++ gk   s  ++le+++  s++v +    + + +v++ GW +Fv+++++ke+D ++F++++ s+f  +
  Sobic.001G166100.7.p  34 LSPMTASSKHSMVVPKRFLKHFAGK--LSGIIKLESPNRGSYDVGI--IEHCNNVVFRHGWGQFVESHHIKENDYLLFRHVEGSCF--K 116
                           56677888999********888777..6679***************..9*******************************998999..9 PP

                           EEEE-S CS
                    B3  94 vkvfrk 99 
                           v +f++
  Sobic.001G166100.7.p 117 VLIFDS 122
                           999875 PP
2B338.81.6e-122563351696
                           EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE..E-SS.SEE..EEEE CS
                    B3  16 lvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk..ldgr.sefelvvkv 96 
                           l ++k +a +h   +++s+ +tl+   ++++W  k++ ++k+ +++l++ W +Fv++n+++egD+++F   + gr s+f  +v +
  Sobic.001G166100.7.p 256 LAISKGYALAHF--PRKSMNVTLQRpGKSKKWHPKFC-KRKDAQMLLKGQWMDFVRDNHVQEGDICIFLptMAGRrSTF--TVYL 335
                           789999999997..56899******5566*******4.444445899999******************94333443444..6655 PP
3B357.52.5e-18431523597
                           -..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE. CS
                    B3   5 ltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefe 91 
                           +++s+v+ + + lv+ k++a+eh  +  es+ +tle + gr+W+ +l +r  +++++lt+ W++Fv++n+ +  D+++F+ + + ++f+
  Sobic.001G166100.7.p 431 MKKSNVNHLrSDLVICKDYAAEHFPQ--ESQFITLERPGGRKWRTRLYVRPDGRAFMLTTRWQNFVHDNHFQKDDICLFQPMPNeKGFR 517
                           444555444456***********855..6678***************88999999*************************996669999 PP

                           .EEEEE CS
                    B3  92 lvvkvf 97 
                            +v+++
  Sobic.001G166100.7.p 518 VMVHLL 523
                           999876 PP
4B360.13.9e-19642733596
                           -..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SSSEE. CS
                    B3   5 ltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.grsefe 91 
                           +++s+v+++ ++lv+ k +a++h  +  +s+ +tle ++g++W  +l +r + ++y+lt+ W++Fv++n+L+  D+++F+ + ++++f+
  Sobic.001G166100.7.p 642 MKKSNVNRLsSNLVICKGYAAQHFPQ--KSQFITLERPRGKKWCSRLHVRPHERAYMLTTRWQNFVRDNQLRKDDICLFQPMpSEKGFR 728
                           556666665566***********855..5668***************99*******************************884559998 PP

                           .EEEE CS
                    B3  92 lvvkv 96 
                            +v++
  Sobic.001G166100.7.p 729 VMVHL 733
                           88876 PP
5B353.83.4e-17858945998
                           HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
                    B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
                             l+s +lv+ k +a++h  +  es+ +tle + g++W  kl +r  +++y+l++ Wk+Fv++n+L+e D+++F+ + + ++f+ + ++
  Sobic.001G166100.7.p 858 KRLNS-NLVICKGYAAQHFPQ--ESQFITLECPGGKRWHPKLHVRPDGRGYMLSTQWKNFVRDNRLREDDICLFQPMPSeKGFRVMAHL 943
                           34444.5***********855..6678***************99*******************************88444999888877 PP

                           E- CS
                    B3  97 fr 98 
                           +r
  Sobic.001G166100.7.p 944 LR 945
                           76 PP
6B331.14.1e-10106711392199
                            HH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                    B3   21 kfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99  
                            + a+e+  +gk  +   ltl+   +gr W+  l   ++   ++ t+ W+eFv++ gL++gD+++F+ ++ ++  ++v+++r+
  Sobic.001G166100.7.p 1067 SDAAEYlpDGK--Q--SLTLRWqGQGRAWRTDL--HNRL--MLATGEWREFVRDSGLEDGDICLFEPMK-ERLAMLVHIIRS 1139
                            55666654333..4..4555554699*******..4443..556677*******************887.788899999885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.47E-2228130IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.2E-2028125IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.98430123IPR003340B3 DNA binding domain
CDDcd100176.80E-2031121No hitNo description
SMARTSM010194.3E-1533123IPR003340B3 DNA binding domain
PfamPF023623.1E-1434122IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-18232338IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-17233337IPR015300DNA-binding pseudobarrel domain
CDDcd100173.16E-17240336No hitNo description
SMARTSM010192.2E-4240339IPR003340B3 DNA binding domain
PROSITE profilePS5086311.194241339IPR003340B3 DNA binding domain
PfamPF023624.7E-10256336IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.2E-21419521IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-21421525IPR015300DNA-binding pseudobarrel domain
CDDcd100177.90E-19425521No hitNo description
SMARTSM010199.3E-7427526IPR003340B3 DNA binding domain
PROSITE profilePS5086311.476428526IPR003340B3 DNA binding domain
PfamPF023627.6E-17430523IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.1E-22630732IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-20633733IPR015300DNA-binding pseudobarrel domain
CDDcd100177.99E-18636732No hitNo description
SMARTSM010195.4E-7638738IPR003340B3 DNA binding domain
PROSITE profilePS5086311.293639737IPR003340B3 DNA binding domain
PfamPF023629.0E-18641733IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.7E-20840944IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-20842946IPR015300DNA-binding pseudobarrel domain
CDDcd100172.85E-17846939No hitNo description
SMARTSM010190.0043848940IPR003340B3 DNA binding domain
PROSITE profilePS5086311.265849947IPR003340B3 DNA binding domain
PfamPF023626.6E-16860945IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-1310351140IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.92E-1110401140IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.003710461141IPR003340B3 DNA binding domain
PROSITE profilePS5086312.05510471140IPR003340B3 DNA binding domain
CDDcd100174.07E-910691138No hitNo description
PfamPF023624.8E-810761139IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1144 aa     Download sequence    Send to blast
MAGSGASSIQ KPCDACKRYL DHLDGKNQNV RSFLSPMTAS SKHSMVVPKR FLKHFAGKLS  60
GIIKLESPNR GSYDVGIIEH CNNVVFRHGW GQFVESHHIK ENDYLLFRHV EGSCFKVLIF  120
DSDGCEKVFP CAGIRSVEYV DISSSSHHET TESLASERFV RCQKGSSCHR GKTAKMAAAF  180
SSSEESGENI PSKNKSSELD DLQTPLRQHY VLSQRSYLSE AQEERVIALI QEIQPESTAF  240
IAVMCKSHVQ PPCPYLAISK GYALAHFPRK SMNVTLQRPG KSKKWHPKFC KRKDAQMLLK  300
GQWMDFVRDN HVQEGDICIF LPTMAGRRST FTVYLIQATT TCSRGGSGKR GSLSRQKETA  360
KKAATSSLYE DSGGEDSLSG YESIQLDHFK AFSKRNYVLS AWCHLTAEQE EKIVALVKKV  420
QPEIPFLVVQ MKKSNVNHLR SDLVICKDYA AEHFPQESQF ITLERPGGRK WRTRLYVRPD  480
GRAFMLTTRW QNFVHDNHFQ KDDICLFQPM PNEKGFRVMV HLLHEPSTRS SSLCRHVHGL  540
NSHINRGVTP TAHVHEKSGS ERDSLSCQKE TTKKAGTSSL HEESGEDSLS GHESIQSDHV  600
KAFSERNYVL SARCHLTAEQ EEEIITLVKK VQPAIPFLVI QMKKSNVNRL SSNLVICKGY  660
AAQHFPQKSQ FITLERPRGK KWCSRLHVRP HERAYMLTTR WQNFVRDNQL RKDDICLFQP  720
MPSEKGFRVM VHLLCEPRTR SSSLGGHAHG LNSHIKRVTS TAHVHEKSGS ERGSLSCQKE  780
TANKARTSSL YEESEEGTLS GYESTQLDHV KAFSERYYVL SARCHLTAEQ KEKIVALVKK  840
VQPEIPVLVV KMKKINVKRL NSNLVICKGY AAQHFPQESQ FITLECPGGK RWHPKLHVRP  900
DGRGYMLSTQ WKNFVRDNRL REDDICLFQP MPSEKGFRVM AHLLRERSTR SSSSDGHVHG  960
LHSHIERGLA STAHVHEKSG SENSGLLDLH KRQPVQQGHQ VLNDCGGASS SKPPLYVVLG  1020
GTCLTPAQDK VVQEKAMAIK AEVSIFVATM NKKILGYNNE AFILDFSDAA EYLPDGKQSL  1080
TLRWQGQGRA WRTDLHNRLM LATGEWREFV RDSGLEDGDI CLFEPMKERL AMLVHIIRSK  1140
QYS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G166100.7.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021313447.10.0uncharacterized protein LOC8062507 isoform X2
TrEMBLA0A1B6QJB70.0A0A1B6QJB7_SORBI; Uncharacterized protein
STRINGSb01g014595.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.16e-19B3 family protein