PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.001G166200.1.p

Common Name

Dof9, Sb01g014530, SORBIDRAFT_01g014530

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

Dof

Protein Properties

Length: 352aa MW: 35519.9 Da PI: 8.7035

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.001G166200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	113.4	9.7e-36	100	155	5	60
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +cprC s++tkfCyynny++sqPr+fC+aCrryWt GG+lrnvP+Gg++rk+ + Sobic.001G166200.1.p 100 GEQCPRCASHDTKFCYYNNYNTSQPRHFCRACRRYWTLGGSLRNVPIGGSTRKRPR 155 579*************************************************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	27.559	101	155	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.3E-31	101	153	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	103	139	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	6.0E-22	103	148	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MAGQVMEAQA ARLQPPTMLA PPFAPLPHST TCKHDVHHHH LTTTTTTATM AATSGTTTNN 60 VVTRTGGAAA ADMAAYLQQL QDAAEAAAKS SGGTGGAARG EQCPRCASHD TKFCYYNNYN 120 TSQPRHFCRA CRRYWTLGGS LRNVPIGGST RKRPRLAHHQ HQQHARRAPA AAAAAHVFGL 180 GLGLGGAAPP PMMMMPPLPC SSSSSSLQGQ GQGQGQGGGG LLGSLFALGA AGAPPLLEGR 240 GAGSSSSFDF DLGLGLPTAG PLHLGEAAAA VQMQGLGLRG GGGNGNAAGS SSSFLWPAGL 300 LADNDDSVDT WTKMPPGAGA GSMWPDFFSS PPAAAAPQTG GMMLHGGAHL M*

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MAGQVMEAQA ARLQPPTMLA PPFAPLPHST TCKHDVHHHH LTTTTTTATM AATSGTTTNN  60
VVTRTGGAAA ADMAAYLQQL QDAAEAAAKS SGGTGGAARG EQCPRCASHD TKFCYYNNYN  120
TSQPRHFCRA CRRYWTLGGS LRNVPIGGST RKRPRLAHHQ HQQHARRAPA AAAAAHVFGL  180
GLGLGGAAPP PMMMMPPLPC SSSSSSLQGQ GQGQGQGGGG LLGSLFALGA AGAPPLLEGR  240
GAGSSSSFDF DLGLGLPTAG PLHLGEAAAA VQMQGLGLRG GGGNGNAAGS SSSFLWPAGL  300
LADNDDSVDT WTKMPPGAGA GSMWPDFFSS PPAAAAPQTG GMMLHGGAHL M*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.001G166200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC582406	0.0	KC582406.1 Sorghum bicolor dof9 protein (dof9) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002464222.1	0.0	dof zinc finger protein DOF3.4
TrEMBL	C5WSA3	0.0	C5WSA3_SORBI; Dof-type zinc finger protein 9
STRING	Sb01g014530.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	2e-25	DOF zinc finger protein 1

Link Out ? help Back to Top
Phytozome	Sobic.001G166200.1.p
Entrez Gene	8062509

Publications ? help Back to Top
Kushwaha H,Gupta S,Singh VK,Rastogi S,Yadav D Genome wide identification of Dof transcription factor gene family in sorghum and its comparative phylogenetic analysis with rice and Arabidopsis. Mol. Biol. Rep., 2011. 38(8): p. 5037-53 [PMID:21161392]