PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.001G179300.1.p

Common Name

Dof5, Sb01g015610, SORBIDRAFT_01g015610

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

Dof

Protein Properties

Length: 386aa MW: 38461.7 Da PI: 8.1318

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.001G179300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.7	3e-39	42	102	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+ l+cprCds ntkfCyynnyslsqPr+fCk+CrryWtkGGalrnvPvGgg+rknk+s+ Sobic.001G179300.1.p 42 PEQGLRCPRCDSPNTKFCYYNNYSLSQPRHFCKTCRRYWTKGGALRNVPVGGGCRKNKRSR 102 67899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	8.3E-33	44	100	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	7.0E-26	46	99	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.609	46	100	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	48	84	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MASATTAATG DDAVGTRKGG TGGATAGGGT APQTQQQTPP PPEQGLRCPR CDSPNTKFCY 60 YNNYSLSQPR HFCKTCRRYW TKGGALRNVP VGGGCRKNKR SRSAAAVAVA AAAAASRLSL 120 NLPPAEAAAA DQQQAAARLG FLGAAHHHPA VASSPIGGAG APAADYHHQQ AGMMALQPRL 180 HGPGAVVGQY VPFGDWPSSG DVSSGGGCHA VNGGAAAAVS MSSSIASSIE SLSFINQDLH 240 WKLQQQRLAT MFLGTPTTSS GAAAGAHVDG AAAAAGAAAP HVVGGTFLHM AAGPPPPHGM 300 VEATTMAPPA ATSWFMDSSC YVLPSPTTAH HANTAAAAVV ATSNCNVVNS SGGGDDDNAT 360 SNNNNCGPGS AIPSWGDMST FAMLP*

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MASATTAATG DDAVGTRKGG TGGATAGGGT APQTQQQTPP PPEQGLRCPR CDSPNTKFCY  60
YNNYSLSQPR HFCKTCRRYW TKGGALRNVP VGGGCRKNKR SRSAAAVAVA AAAAASRLSL  120
NLPPAEAAAA DQQQAAARLG FLGAAHHHPA VASSPIGGAG APAADYHHQQ AGMMALQPRL  180
HGPGAVVGQY VPFGDWPSSG DVSSGGGCHA VNGGAAAAVS MSSSIASSIE SLSFINQDLH  240
WKLQQQRLAT MFLGTPTTSS GAAAGAHVDG AAAAAGAAAP HVVGGTFLHM AAGPPPPHGM  300
VEATTMAPPA ATSWFMDSSC YVLPSPTTAH HANTAAAAVV ATSNCNVVNS SGGGDDDNAT  360
SNNNNCGPGS AIPSWGDMST FAMLP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.001G179300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC582402	0.0	KC582402.1 Sorghum bicolor dof5 protein (dof5) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002464283.1	0.0	uncharacterized protein LOC8064546
TrEMBL	C5WU64	0.0	C5WU64_SORBI; Dof-type zinc finger protein 5
STRING	Sb01g015610.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	3e-31	TARGET OF MONOPTEROS 6

Link Out ? help Back to Top
Phytozome	Sobic.001G179300.1.p
Entrez Gene	8064546

Publications ? help Back to Top
Kushwaha H,Gupta S,Singh VK,Rastogi S,Yadav D Genome wide identification of Dof transcription factor gene family in sorghum and its comparative phylogenetic analysis with rice and Arabidopsis. Mol. Biol. Rep., 2011. 38(8): p. 5037-53 [PMID:21161392]