PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G190000.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 589aa    MW: 62531 Da    PI: 6.3707
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G190000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.97.2e-11529578147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                           r++W++ E++ l+++vk++G+g+Wk I    +   + R+  ++k++++++
  Sobic.001G190000.1.p 529 RKKWSEIEEKTLLEGVKKYGKGNWKDIKLAYPdvfEERSTVDLKDKFRNL 578
                           789********************************99***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.156524583IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.4E-12525584IPR009057Homeodomain-like
SuperFamilySSF466891.42E-13527580IPR009057Homeodomain-like
SMARTSM007174.8E-8528581IPR001005SANT/Myb domain
PfamPF002491.8E-9529578IPR001005SANT/Myb domain
CDDcd116605.87E-21530580No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MALVDAKAAG AFTSTSIVAA APAPTAEHLF LVVLDGVETP IHEGTTLHGS AGGTVTVTSP  60
GQLSADGLHS VVLVRGGGTG AVRFTLCADA AAEGVGLASF DRCGAARVEG AREVSVSRCR  120
AAEVERAGRV TLDRCRDARL RGGGALRAAR CRRADVESFG GVRLARCRAA RADWCGTVEV  180
ELCRAVDVTR CGAVTGERCR VVNAAGCGSV DVARAVINLV EEEQPFPAST ASSSRIGGGI  240
TTGIVPAVAM PPLTAADDFL ILEFIAGNRR IPYAVFDSLL ACLSSPSAIH RTSQRLRQAL  300
VLRALDAALL TEGASSLVLY KARKVLADPD AAACFPHQIS VTDNEENDEA RAAAAVADLK  360
RLLDLEWANL PPSTLERAAD RIAGDGAHQT WAAADHIKLG ESTEHEILSK AVQDGSASHQ  420
PIVTEVADNV SNANDADGAQ RDDEAHSSNE NSEADRGQEG MAGHQNASVK GGEGQVSEKS  480
VPASKRCSLM ERNPNASTYE WDSSDDDQPV RKRKLHRFER TSTCAHKIRK KWSEIEEKTL  540
LEGVKKYGKG NWKDIKLAYP DVFEERSTVD LKDKFRNLER HHHESASA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.127250.0panicle
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G190000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794680.0HF679468.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB62 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021310271.10.0uncharacterized protein LOC8065670 isoform X2
TrEMBLA0A1Z5S6C80.0A0A1Z5S6C8_SORBI; Uncharacterized protein
STRINGGRMZM2G024054_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139982224
Representative plantOGRP1278533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.11e-10TRF-like 5