PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.001G199200.1.p

Common Name

Sb01g017560, SORBIDRAFT_01g017560

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

YABBY

Protein Properties

Length: 321aa MW: 33312.9 Da PI: 9.0155

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.001G199200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	80.9	3.8e-25	50	99	5	54
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas 54 +seq+Cyv+C fC+t+l+vsvP++slfk+vtvrCGhC+sll+vn++ Sobic.001G199200.1.p 50 PASEQLCYVHCHFCDTVLVVSVPTSSLFKTVTVRCGHCSSLLTVNMRGLL 99 689****************************************9998765 PP
2	YABBY	130.5	2.3e-40	208	273	106	170
YABBY 106 deevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +e +pr+ p ++rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl Sobic.001G199200.1.p 208 KEPSPRTNPvINRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 273 566788888689****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	6.7E-62	51	273	IPR006780	YABBY protein
SuperFamily	SSF47095	4.84E-8	211	266	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	3.9E-4	222	265	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MSSSSSSSSA ASAATVFPPS PQLPPSPLLV ENLPPLHQLT PVAAAEAAAP ASEQLCYVHC 60 HFCDTVLVVS VPTSSLFKTV TVRCGHCSSL LTVNMRGLLF PGTPTNTAAA AAPPAAVTAS 120 TTTTTTTTIT TAPPPATSVN NGQFHFPQSV DLAPNPHHQS LLLDEISSAN PRLQLLEQHG 180 LGGLIPSGRN AAAPAPPPPP AAAGKGAKEP SPRTNPVINR PPEKRQRVPS AYNRFIKDEI 240 QRIKAGNPDI SHREAFSAAA KNWAHFPHIH FGLMPDHQGL KKTSLLPQDL QRKDGLLKEG 300 LYAAAAAAAA AAANMGVAPY *

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in shoot apex and young inflorescences. {ECO:0000269\|PubMed:17216490}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.001G199200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ727991	0.0	KJ727991.1 Zea mays clone pUT6111 C2C2-YABBY transcription factor (YAB9) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002464399.1	0.0	protein YABBY 3
Swissprot	Q8L556	1e-102	YAB3_ORYSJ; Protein YABBY 3
TrEMBL	C5WWB5	0.0	C5WWB5_SORBI; Uncharacterized protein
STRING	Sb01g017560.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1445	38	121
Representative plant	OGRP13003	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	1e-43	YABBY family protein

Link Out ? help Back to Top
Phytozome	Sobic.001G199200.1.p
Entrez Gene	8067064

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]