PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G204400.1.p
Common NameSb01g018060, SORBIDRAFT_01g018060
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB
Protein Properties Length: 257aa    MW: 27835.9 Da    PI: 9.0873
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G204400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.21.9e-08442148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+W++eEd+l+++ ++++G+         +g++R++ +c+srw++yl
  Sobic.001G204400.1.p  4 KGKWSKEEDDLIINHIQRHGS---------IGLRRCGRSCRSRWLNYL 42
                          79******************4.........5999************97 PP
2Myb_DNA-binding31.25e-104992247
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                          g++T  E+ ++ +   + G+  W+ Ia+ ++ gRt+  +k++w++ 
  Sobic.001G204400.1.p 49 GNFTLAEERIICEMYSKRGSC-WSVIAAQLP-GRTDLAIKNYWNST 92
                          89*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.549142IPR017930Myb domain
SuperFamilySSF466893.09E-22389IPR009057Homeodomain-like
SMARTSM007173.5E-6344IPR001005SANT/Myb domain
PfamPF002495.0E-7442IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-12549IPR009057Homeodomain-like
PROSITE profilePS5129419.3944397IPR017930Myb domain
SMARTSM007172.0E-94795IPR001005SANT/Myb domain
PfamPF002499.8E-94992IPR001005SANT/Myb domain
CDDcd001674.30E-75093No hitNo description
Gene3DG3DSA:1.10.10.602.0E-205096IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MIKKGKWSKE EDDLIINHIQ RHGSIGLRRC GRSCRSRWLN YLRPGLKHGN FTLAEERIIC  60
EMYSKRGSCW SVIAAQLPGR TDLAIKNYWN STLKKKYLLP AARTAATWGR GSRRTCPSGS  120
TSSDAAGVPA RGLQLVVYSN EESSTAGSSS PSPSPVKPVL AGPTPAPVAA AGQEPIAAVP  180
NSGPVVRIEQ KPALASRLPL EKPLPREAGD QIGERLMDLV CAPASPIPLN FMEPELLACI  240
DGFDDTDSFL PWFDHH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-2329625127MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G204400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0798881e-32AC079888.10 Oryza sativa chromosome 10 BAC OSJNBa0078O01 genomic sequence, complete sequence.
GenBankAP0149661e-32AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankCP0126181e-32CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021304595.11e-166transcription factor MYB4
TrEMBLA0A1B6QJZ30.0A0A1B6QJZ3_SORBI; Uncharacterized protein
STRINGSb01g018060.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122282638
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37780.12e-25myb domain protein 87