PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.001G206300.1.p

Common Name

Sb01g018240, SORBIDRAFT_01g018240

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

Dof

Protein Properties

Length: 262aa MW: 26378.4 Da PI: 9.273

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.001G206300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	103.5	1.2e-32	91	145	5	59
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 ++cprC+s+ntkfCyynnys +qPry+CkaCrr+Wt+GG+lr+vPvGggr++++ Sobic.001G206300.1.p 91 PRQCPRCQSANTKFCYYNNYSREQPRYLCKACRRHWTEGGTLRDVPVGGGRKNRR 145 679**********************************************987655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	2.1E-30	92	144	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	25.919	92	146	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	94	130	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	5.0E-16	99	136	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MPSSFLTSPS SSASSHLSYL IPASARPPPP LAMGQGYGGA TGGISVVPTG GVVATTNALN 60 AAAAAPPPPR QGSASRNAGG AGHPPLPRPP PRQCPRCQSA NTKFCYYNNY SREQPRYLCK 120 ACRRHWTEGG TLRDVPVGGG RKNRRGAKGG SAKASASAAA AATNVLGVGG ADTFPDFLRQ 180 QLLQFQPGAA VGGGGYAIDL GAWQQMSAAT APPPPPQGTG GDVSTLGAAG TTAAEAEANC 240 VALQYWSEWQ QDGMPGFDGA C*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sbi.20287	5e-39	callus

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.001G206300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ727985	1e-158	KJ727985.1 Zea mays clone pUT6101 C2C2-DOF transcription factor (DOF13) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002464429.1	0.0	dof zinc finger protein DOF2.4
Refseq	XP_021307462.1	0.0	dof zinc finger protein DOF2.4
TrEMBL	C5WXA9	0.0	C5WXA9_SORBI; Uncharacterized protein
STRING	Sb01g018240.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00940.1	4e-17	Dof family protein

Link Out ? help Back to Top
Phytozome	Sobic.001G206300.1.p
Entrez Gene	8065811