PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G234500.1.p
Common NameSb01g020555, SORBIDRAFT_01g020555
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 139aa    MW: 14246.8 Da    PI: 9.5811
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G234500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.42.3e-201364155
                   AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          ++y+GVr ++ +g+++AeIrdp  +   +r++lg+f+taeeAa+a+++a+ + +g
  Sobic.001G234500.1.p 13 TKYRGVRKRP-WGKFAAEIRDPERG--GARVWLGTFDTAEEAARAYDRAAFAQRG 64
                          69********.**********8333..4***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.0E-141364IPR001471AP2/ERF domain
CDDcd000184.58E-281372No hitNo description
Gene3DG3DSA:3.30.730.102.1E-311472IPR001471AP2/ERF domain
PROSITE profilePS5103224.2761472IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-231473IPR016177DNA-binding domain
SMARTSM003806.1E-331478IPR001471AP2/ERF domain
PRINTSPR003674.6E-121526IPR001471AP2/ERF domain
PRINTSPR003674.6E-123854IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MEGGKDAAGG GGTKYRGVRK RPWGKFAAEI RDPERGGARV WLGTFDTAEE AARAYDRAAF  60
AQRGATAVLN FPGEIAGATR RGAGGSSSSS SAAAAAAPAA ASLRATGRGR GDGEKIELEC  120
LDDKILEDLL DDGKYGRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-281275366ATERF1
3gcc_A2e-281275366ATERF1
5wx9_A3e-28175175Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1210GGKDAAGGG
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G234500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7282771e-109KJ728277.1 Zea mays clone pUT6555 AP2-EREBP transcription factor (EREB74) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002464556.24e-88ethylene-responsive transcription factor ERF096
SwissprotQ9LTC52e-35ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A1B6QKL02e-89A0A1B6QKL0_SORBI; Uncharacterized protein
STRINGSb01g020555.11e-88(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.14e-20ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]